Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   J8F86_RS08925 Genome accession   NZ_CP072565
Coordinates   1882384..1883811 (-) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain WG5::PA8     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1877384..1888811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8F86_RS08895 (J8F86_08840) yeeZ 1877439..1878263 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  J8F86_RS08900 (J8F86_08845) yeeY 1878309..1879238 (+) 930 WP_081508817.1 LysR substrate-binding domain-containing protein -
  J8F86_RS08905 (J8F86_08850) yoeI 1879453..1879515 (+) 63 WP_010723108.1 membrane protein YoeI -
  J8F86_RS08910 (J8F86_08855) plaP 1879505..1880863 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  J8F86_RS08915 (J8F86_08860) tsuA 1881042..1882100 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  J8F86_RS08920 (J8F86_08865) tsuB 1882114..1882341 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  J8F86_RS08925 (J8F86_08870) sbcB 1882384..1883811 (-) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  J8F86_RS08930 (J8F86_08875) dacD 1884020..1885186 (+) 1167 WP_081508818.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  J8F86_RS08935 (J8F86_08880) sbmC 1885305..1885778 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  J8F86_RS08940 (J8F86_08885) yeeA 1885976..1887034 (+) 1059 WP_001200905.1 FUSC family protein -
  J8F86_RS08945 (J8F86_08890) tmaR 1887206..1887535 (+) 330 WP_000450409.1 DUF496 family protein -
  J8F86_RS08950 (J8F86_08895) - 1887636..1887818 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  J8F86_RS08955 (J8F86_08900) - 1887872..1888018 (+) 147 Protein_1754 transposase domain-containing protein -
  J8F86_RS08960 (J8F86_08905) - 1888307..1888387 (-) 81 Protein_1755 hypothetical protein -
  J8F86_RS08965 (J8F86_08910) yeeW 1888433..1888627 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=484178 J8F86_RS08925 WP_000980592.1 1882384..1883811(-) (sbcB) [Escherichia coli strain WG5::PA8]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=484178 J8F86_RS08925 WP_000980592.1 1882384..1883811(-) (sbcB) [Escherichia coli strain WG5::PA8]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583