Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   J8F87_RS08990 Genome accession   NZ_CP072564
Coordinates   1889798..1890274 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain WG5::PA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1884798..1895274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8F87_RS08940 (J8F87_08885) sbmC 1885291..1885764 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  J8F87_RS08945 (J8F87_08890) yeeA 1885962..1887020 (+) 1059 WP_001200905.1 FUSC family protein -
  J8F87_RS08950 (J8F87_08895) tmaR 1887192..1887521 (+) 330 WP_000450409.1 DUF496 family protein -
  J8F87_RS08955 (J8F87_08900) - 1887622..1887804 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  J8F87_RS08960 (J8F87_08905) - 1887858..1888004 (+) 147 Protein_1755 transposase domain-containing protein -
  J8F87_RS08965 (J8F87_08910) - 1888293..1888373 (-) 81 Protein_1756 hypothetical protein -
  J8F87_RS08970 (J8F87_08915) yeeW 1888419..1888613 (-) 195 WP_000988600.1 DUF5983 family protein -
  J8F87_RS08975 (J8F87_08920) - 1888675..1888983 (-) 309 Protein_1758 TA system toxin CbtA family protein -
  J8F87_RS08980 (J8F87_08925) cbeA 1889072..1889440 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  J8F87_RS08985 (J8F87_08930) yeeT 1889514..1889735 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  J8F87_RS08990 (J8F87_08935) radC 1889798..1890274 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  J8F87_RS08995 (J8F87_08940) - 1890290..1890439 (-) 150 Protein_1762 antirestriction protein -
  J8F87_RS09000 (J8F87_08945) - 1890441..1890554 (-) 114 Protein_1763 IS5/IS1182 family transposase -
  J8F87_RS09005 (J8F87_08950) - 1890631..1891083 (-) 453 Protein_1764 hypothetical protein -
  J8F87_RS09010 (J8F87_08955) - 1891219..1892289 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  J8F87_RS09015 - 1892286..1892360 (-) 75 Protein_1766 hypothetical protein -
  J8F87_RS09020 (J8F87_08960) - 1892349..1893353 (+) 1005 Protein_1767 transposase -
  J8F87_RS09025 (J8F87_08965) - 1893363..1893852 (-) 490 Protein_1768 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=484097 J8F87_RS08990 WP_001186773.1 1889798..1890274(-) (radC) [Escherichia coli strain WG5::PA2]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=484097 J8F87_RS08990 WP_001186773.1 1889798..1890274(-) (radC) [Escherichia coli strain WG5::PA2]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392