Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PPM_RS22520 Genome accession   NC_017542
Coordinates   4976217..4977170 (-) Length   317 a.a.
NCBI ID   WP_013373135.1    Uniprot ID   E3EAF0
Organism   Paenibacillus polymyxa M1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4971217..4982170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPM_RS22495 (PPM_4312) - 4971686..4972597 (-) 912 WP_013373130.1 aldo/keto reductase -
  PPM_RS22500 (PPM_4313) - 4972755..4973498 (-) 744 WP_013373131.1 alpha/beta hydrolase -
  PPM_RS22505 (PPM_4314) - 4973532..4974512 (-) 981 WP_013373132.1 siderophore ABC transporter substrate-binding protein -
  PPM_RS22510 (PPM_4315) - 4974525..4975283 (-) 759 WP_013373133.1 ABC transporter ATP-binding protein -
  PPM_RS22515 (PPM_4316) - 4975277..4976227 (-) 951 WP_013373134.1 iron chelate uptake ABC transporter family permease subunit -
  PPM_RS22520 (PPM_4317) ceuB 4976217..4977170 (-) 954 WP_013373135.1 ABC transporter permease Machinery gene
  PPM_RS22525 (PPM_4318) - 4977494..4978171 (+) 678 WP_013373136.1 response regulator transcription factor -
  PPM_RS22530 (PPM_4319) - 4978173..4979090 (+) 918 WP_013373137.1 sensor histidine kinase -
  PPM_RS22535 (PPM_4320) - 4979199..4979876 (+) 678 WP_013373138.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34712.73 Da        Isoelectric Point: 9.9012

>NTDB_id=48408 PPM_RS22520 WP_013373135.1 4976217..4977170(-) (ceuB) [Paenibacillus polymyxa M1]
MKLRYLILAILVLAFASVFIGVHDVTPLDLFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=48408 PPM_RS22520 WP_013373135.1 4976217..4977170(-) (ceuB) [Paenibacillus polymyxa M1]
ATGAAATTGCGTTATTTAATACTGGCTATTCTGGTACTAGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATTTGTTCCACTTAACCAACGATCAAGCGCAGGTGCTCCTGATTAGCAGATTTCCACGTTTGATCAGCATCATTA
TCGCAGGAGCGAGTATGAGTATCTGCGGGCTGATCATGCAGCAGCTTACCCGGAACCGATTTGTATCGCCCACCACCGCA
GGGACGATGGATGCGGCACGATTAGGTGTGCTGATGGCCATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTTGGATTTGCTCTAGGGGGAACGCTGATTTTCATGAAGATATTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTTGGTCTGATGTTTGGGGGCATTTTAAATTCGGTGACGACTTTTTTTGCCTACAAATATAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGCCGCTACGAGATGCTGTATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTATATATATGCGAATCGTTTTACAATTGCAGGTATGGGTGAGGATTTTGCAGCCAACTTGGGCG
TACATTACAAGCGCACCGTCAATGTGGGTTTGGTGATCGTGGCTTTGGTGTCCTCTGTTGTCATCTTAACCGTCGGGACA
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGTATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCTCATAC
AGCGATCTTGGGCGCCGTTTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTACCCATATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E3EAF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment