Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   IC768_RS17270 Genome accession   NZ_CP061675
Coordinates   3590856..3591656 (-) Length   266 a.a.
NCBI ID   WP_190977850.1    Uniprot ID   A0A7H2QYU4
Organism   Acinetobacter seifertii strain AS17     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3585856..3596656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC768_RS17250 (IC768_17250) - 3586921..3587619 (-) 699 WP_002053293.1 YfgM family protein -
  IC768_RS17255 (IC768_17255) hisS 3587648..3588940 (-) 1293 WP_077169052.1 histidine--tRNA ligase -
  IC768_RS17260 (IC768_17260) ispG 3588937..3590052 (-) 1116 WP_004698760.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  IC768_RS17265 (IC768_17265) - 3590074..3590865 (-) 792 WP_077169053.1 helix-turn-helix domain-containing protein -
  IC768_RS17270 (IC768_17270) pilF 3590856..3591656 (-) 801 WP_190977850.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  IC768_RS17275 (IC768_17275) rlmN 3591672..3592904 (-) 1233 WP_004698763.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  IC768_RS17280 (IC768_17280) ndk 3593027..3593458 (-) 432 WP_190981868.1 nucleoside-diphosphate kinase -
  IC768_RS17285 (IC768_17285) iscX 3593572..3593772 (-) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  IC768_RS17290 (IC768_17290) - 3593872..3594423 (-) 552 WP_019458079.1 phosphatase PAP2 family protein -
  IC768_RS17295 (IC768_17295) - 3594448..3595746 (-) 1299 WP_077169054.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30109.44 Da        Isoelectric Point: 9.3755

>NTDB_id=484052 IC768_RS17270 WP_190977850.1 3590856..3591656(-) (pilF) [Acinetobacter seifertii strain AS17]
MSTPKLKIMLSMGVAVAFLASGCQTSPTLKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSIESRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=484052 IC768_RS17270 WP_190977850.1 3590856..3591656(-) (pilF) [Acinetobacter seifertii strain AS17]
TTGAGTACTCCGAAGTTAAAGATCATGTTATCTATGGGGGTTGCAGTTGCATTTCTGGCAAGTGGTTGTCAGACGTCGCC
AACACTAAAAAAGGACCCGGAAAAAGCAGTTAAGGTGCGTACGCAGCTTGCTGCAGAATACATTCGTTCTGGTGACTTGG
ACTCAGCAAAACGTTCCCTCGACCAAGCTCTAAGTATCGAGAGTCGTGACGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCAGAACATTATTTTAAACGTGCAATTTCTTCTGAGCCAGATAA
TGCTCAGGCGCGTAATAATTATGGTACGTATTTGTATCAAATGGAACGTTATAATGATGCTGTCGAGCAGTTCCGTATTG
CTGGTGCAACATTAGGTTATGACCAACGTTACCAAGCCTTAGAAAATCTGGGGCGGATTTATTTAAAATTAGGTGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCGCTCCTTGCTAACCGTGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCTCGTGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAATCAA
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2QYU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

97.368

100

0.974
  pilF Acinetobacter baylyi ADP1

73.585

99.624

0.733