Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IC769_RS16515 Genome accession   NZ_CP061672
Coordinates   3507390..3509618 (+) Length   742 a.a.
NCBI ID   WP_191108794.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS23     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3502390..3514618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC769_RS16490 (IC769_16490) - 3503925..3504263 (-) 339 WP_019456905.1 tRNA-binding protein -
  IC769_RS16495 (IC769_16495) - 3504496..3504756 (+) 261 WP_019456904.1 DUF2798 domain-containing protein -
  IC769_RS16500 (IC769_16500) - 3504818..3505162 (-) 345 WP_019456903.1 hypothetical protein -
  IC769_RS16505 (IC769_16505) gspG 3505428..3506012 (-) 585 WP_174736375.1 type II secretion system major pseudopilin GspG -
  IC769_RS16510 (IC769_16510) gspF 3506036..3507241 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  IC769_RS16515 (IC769_16515) priA 3507390..3509618 (+) 2229 WP_191108794.1 primosomal protein N' Machinery gene
  IC769_RS16520 (IC769_16520) - 3509694..3511535 (+) 1842 WP_191108795.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IC769_RS16525 (IC769_16525) - 3511701..3512576 (+) 876 WP_004699009.1 Hsp33 family molecular chaperone HslO -
  IC769_RS16530 (IC769_16530) - 3512714..3513325 (+) 612 WP_019456899.1 LysE family translocator -
  IC769_RS16535 (IC769_16535) - 3513475..3514436 (+) 962 Protein_3263 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83985.87 Da        Isoelectric Point: 8.5653

>NTDB_id=484017 IC769_RS16515 WP_191108794.1 3507390..3509618(+) (priA) [Acinetobacter seifertii strain AS23]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETTTLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQFQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=484017 IC769_RS16515 WP_191108794.1 3507390..3509618(+) (priA) [Acinetobacter seifertii strain AS23]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCACGCGTCGCGATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAACGGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATCTATGGAAAATCATTC
CTTGTGACAATGTTGAAGCCTTGTTAAAGCGTTCCATTAAGCAACAAGATGCATATCAGATTTTAAAATTACATCCTGCC
GGAACTACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACGACTACGCTTAAAGCACTTCAAAAGAAAGGACTCATAGA
CTGTACACTTGAGCCTCATGATTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCACTTACGCTAAATGATGATCAAA
AGAAGGCAACTCAGCACGTCATTAATGCACAGCATCAATTCCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGTTAAAACAAGGTAAGCAAGTCCTAGTATTGGTTCCTGAAATTGGCTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATTGCTTTATTGCATTCAGGCTTAAATGACTCTA
AACGCTTACAAGCATGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGAACCCGTTCAGCCATTTATACACCG
CTGCCACGTCTGGGCCTCATCATTTTAGATGAAGAACACGACCTGTCTTATAAACAGCAAGAAGGCTTCCGTTATCATGC
GCGTGATGTCGCACTGTACCGAGGCCACTTACAAAGCTGCCCTGTTATTTTAGGTTCGGCCACTCCAAGCATCGACAGCT
ATCACTTAGTAGAAACTGGTAAGTTAACTTCACTGCAACTGAACCAGCGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAGCATGGAATTAGCCAGCCTTTAATCGAGCAAATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCGCCTGTACTTGTGTGTGAAAGCTGTGGATGGCAAGCAA
ATTGCCCACATTGCGATGCGCATTTTACGTTGCATACTCAGCCTTATTCTTATTTACATTGTCACCACTGCGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCAGGAACAGCCAAAGTTGAAGA
ACACTTACAAGAACTATTCCCAGATTATGATGTGATTCGTGTTGACCGTGACAGTACAAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCCACAATTTTGCTTGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCGGGTTTACTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCACA
GTTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCGGTCGCGAAACAAACATTAGCTGAACGAAAAGTTGCATTA
CTGCCGCCTTATCGTTATGCAGTCTTAATTCGTGCTGAGTCGAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCCGAACAGCTTCGCCAAATTGCAGGTGATATTGTTGATATTTGGGGGCCGATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTTAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.17

100

0.972