Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   J7D37_RS16130 Genome accession   NZ_CP072526
Coordinates   3381429..3381878 (-) Length   149 a.a.
NCBI ID   WP_004745398.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3376429..3386878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS16115 (J7D37_16115) - 3379114..3379896 (-) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  J7D37_RS16120 (J7D37_16120) pilW 3379893..3380930 (-) 1038 WP_038347692.1 PilW family protein Machinery gene
  J7D37_RS16125 (J7D37_16125) pilV 3380932..3381432 (-) 501 WP_031380015.1 type IV pilus modification protein PilV Machinery gene
  J7D37_RS16130 (J7D37_16130) fimU 3381429..3381878 (-) 450 WP_004745398.1 GspH/FimT family pseudopilin Machinery gene
  J7D37_RS16135 (J7D37_16135) - 3381784..3382035 (+) 252 Protein_3156 hypothetical protein -
  J7D37_RS16140 (J7D37_16140) ispH 3382048..3382998 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J7D37_RS16145 (J7D37_16145) gmk 3383121..3383750 (+) 630 WP_000015937.1 guanylate kinase -
  J7D37_RS16150 (J7D37_16150) rpoZ 3383823..3384101 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J7D37_RS16155 (J7D37_16155) - 3384140..3384270 (+) 131 Protein_3160 hypothetical protein -
  J7D37_RS16160 (J7D37_16160) - 3384310..3386415 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16102.74 Da        Isoelectric Point: 9.2303

>NTDB_id=483968 J7D37_RS16130 WP_004745398.1 3381429..3381878(-) (fimU) [Acinetobacter baumannii strain DETAB-E227]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPMFGDLLINQNLNRSTEELVSSINQARMKAVVERRQVKVQLNSTYIADTN
NQINWMPSGKAQLKTGSDTSIIFLMSGLVKDATGDTTFEICNKTGGNKSKIISVSRMGAIQSTTVGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=483968 J7D37_RS16130 WP_004745398.1 3381429..3381878(-) (fimU) [Acinetobacter baumannii strain DETAB-E227]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCAATGTTTGGGGATCTGTTAATTAATCAAAATTTGAATAGAAGTACAGAGGAGCTGGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTGTGGTAGAACGTAGACAAGTAAAAGTGCAATTAAATTCTACTTATATTGCAGATACTAAT
AATCAAATTAATTGGATGCCAAGCGGAAAAGCTCAATTAAAGACGGGATCTGATACCTCTATAATATTTCTGATGTCCGG
TTTAGTAAAAGACGCAACCGGAGATACTACATTTGAAATTTGTAATAAGACTGGTGGTAATAAATCAAAAATTATTAGTG
TTTCAAGAATGGGAGCAATTCAATCGACTACGGTGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

41.509

100

0.443