Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   J7D37_RS16125 Genome accession   NZ_CP072526
Coordinates   3380932..3381432 (-) Length   166 a.a.
NCBI ID   WP_031380015.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-E227     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3375932..3386432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7D37_RS16115 (J7D37_16115) - 3379114..3379896 (-) 783 WP_031963609.1 pilus assembly PilX N-terminal domain-containing protein -
  J7D37_RS16120 (J7D37_16120) pilW 3379893..3380930 (-) 1038 WP_038347692.1 PilW family protein Machinery gene
  J7D37_RS16125 (J7D37_16125) pilV 3380932..3381432 (-) 501 WP_031380015.1 type IV pilus modification protein PilV Machinery gene
  J7D37_RS16130 (J7D37_16130) fimU 3381429..3381878 (-) 450 WP_004745398.1 GspH/FimT family pseudopilin Machinery gene
  J7D37_RS16135 (J7D37_16135) - 3381784..3382035 (+) 252 Protein_3156 hypothetical protein -
  J7D37_RS16140 (J7D37_16140) ispH 3382048..3382998 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J7D37_RS16145 (J7D37_16145) gmk 3383121..3383750 (+) 630 WP_000015937.1 guanylate kinase -
  J7D37_RS16150 (J7D37_16150) rpoZ 3383823..3384101 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J7D37_RS16155 (J7D37_16155) - 3384140..3384270 (+) 131 Protein_3160 hypothetical protein -
  J7D37_RS16160 (J7D37_16160) - 3384310..3386415 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18270.82 Da        Isoelectric Point: 4.8719

>NTDB_id=483967 J7D37_RS16125 WP_031380015.1 3380932..3381432(-) (pilV) [Acinetobacter baumannii strain DETAB-E227]
MKKIAHQRGMGMIEILVALLILAIGVLGFIALQYRALEASAESTSRVQAITIARDIAERIRVNRNSLAVYNQQLQDPIKQ
KDFVKDCFQDNCSDTDLADFDVAQVVKNASSLGMTMNMIACPQTKNRQCVYIAWGDTSATNGTSAGDCTQDTSYNDNSTC
VIMETY

Nucleotide


Download         Length: 501 bp        

>NTDB_id=483967 J7D37_RS16125 WP_031380015.1 3380932..3381432(-) (pilV) [Acinetobacter baumannii strain DETAB-E227]
ATGAAGAAGATTGCACACCAACGTGGTATGGGAATGATTGAAATTTTAGTTGCTTTGCTGATTTTAGCAATTGGAGTTTT
AGGATTTATTGCTTTGCAATATAGAGCTTTAGAGGCAAGTGCAGAAAGCACTTCACGCGTACAAGCAATTACGATAGCAC
GTGATATAGCTGAGCGGATTAGAGTTAACCGTAATTCATTAGCTGTGTATAACCAACAACTTCAAGATCCTATTAAACAG
AAAGACTTTGTCAAAGATTGCTTCCAAGACAATTGTAGTGACACAGATTTAGCAGATTTCGATGTTGCACAAGTTGTGAA
AAATGCGTCTTCCTTGGGCATGACTATGAATATGATTGCTTGCCCACAAACTAAAAATCGACAATGTGTTTATATTGCAT
GGGGTGATACTAGTGCAACGAATGGCACTAGTGCAGGGGATTGTACTCAAGATACTTCATATAACGATAATTCAACGTGT
GTAATTATGGAGACCTATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baylyi ADP1

40.659

100

0.446
  pilV Acinetobacter baumannii D1279779

39.665

100

0.428