Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IC772_RS17635 Genome accession   NZ_CP061664
Coordinates   3804509..3806077 (+) Length   522 a.a.
NCBI ID   WP_223852345.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3799509..3811077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS17615 (IC772_17605) - 3800002..3801303 (+) 1302 WP_039254228.1 homoserine dehydrogenase -
  IC772_RS17620 (IC772_17610) thrC 3801358..3802497 (+) 1140 WP_019457006.1 threonine synthase -
  IC772_RS17625 (IC772_17615) pbpG 3802605..3803651 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC772_RS17630 (IC772_17620) - 3803863..3804498 (+) 636 WP_019457005.1 response regulator -
  IC772_RS17635 (IC772_17625) pilS 3804509..3806077 (+) 1569 WP_223852345.1 sensor histidine kinase Regulator
  IC772_RS17640 (IC772_17630) pilR 3806101..3807522 (+) 1422 WP_191015989.1 sigma-54-dependent transcriptional regulator Regulator
  IC772_RS17645 (IC772_17635) - 3807526..3808710 (-) 1185 WP_068932669.1 S41 family peptidase -
  IC772_RS17650 (IC772_17640) gpmI 3808726..3810273 (-) 1548 WP_004699264.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59091.25 Da        Isoelectric Point: 6.3383

>NTDB_id=483945 IC772_RS17635 WP_223852345.1 3804509..3806077(+) (pilS) [Acinetobacter seifertii strain AS28]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQTDNSLQQPSLYFYTLLGYSIVSFVQLLGFKFIAAQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYNIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGDLQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQAKRIDSIVQDTLGLARSERTHPIQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPDVTINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=483945 IC772_RS17635 WP_223852345.1 3804509..3806077(+) (pilS) [Acinetobacter seifertii strain AS28]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAACTGACAATAGTTTGCAGCAACCATCTTTATATTTTT
ACACCCTACTAGGCTACTCAATTGTCAGCTTTGTTCAATTGTTAGGCTTTAAATTTATCGCAGCTCAGGCAACACGCCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTTTACTGACTTTTTCTGTTGGTGAACCAAATTTACAACTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTGCTCAGCGCAAGAATGTCTTTAATCATTACCTTGCTTGCGA
TCATTGCAGTAATTTACCAACGCTTCGTGGGGAGTTTGTTCGACTACAACAATCTAAACACGATCGGGAATAGTGCCCTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGGATTGGTCAAATTGCGGTTCAGCGCTTTAAATTACTTGAAGCTTTGACCTT
TCACCAGTCAGTTGAACTTTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACAACATTGTGCTCAGCAATCCAGCTGCTTGCTCACTACTCGGTATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGACTTACAAGAAGGTGACCGATTTAT
TTTTGAGTCCCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACACTGC
TCATTTTACAAGATGCTCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGACAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAATCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGACCCAGAACAACA
AAATACTTTGCGACATATGATTGGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCATCCTATTCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCAGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTTATGATCAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTGATGTCACGATCAATATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGCGAAGGTGTCTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-271)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.529

100

0.925