Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IC772_RS17480 Genome accession   NZ_CP061664
Coordinates   3773593..3773919 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter seifertii strain AS28     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3768593..3778919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS17460 (IC772_17450) - 3768699..3769325 (-) 627 WP_191015972.1 FHA domain-containing protein -
  IC772_RS17465 (IC772_17455) gspD 3769366..3771642 (-) 2277 WP_191015974.1 type II secretion system secretin GspD -
  IC772_RS17470 (IC772_17460) - 3771684..3772520 (-) 837 WP_191015975.1 type II secretion system protein N -
  IC772_RS17475 (IC772_17465) gspN 3772520..3773263 (-) 744 WP_004699190.1 type II secretion system protein N -
  IC772_RS17480 (IC772_17470) hns 3773593..3773919 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  IC772_RS17485 (IC772_17475) - 3774113..3774553 (-) 441 WP_004699193.1 acyl-CoA thioesterase -
  IC772_RS17490 (IC772_17480) - 3774561..3775754 (-) 1194 WP_191015977.1 heme biosynthesis protein HemY -
  IC772_RS17495 (IC772_17485) - 3775764..3776603 (-) 840 WP_191015978.1 hypothetical protein -
  IC772_RS17500 (IC772_17490) - 3776612..3777378 (-) 767 Protein_3445 uroporphyrinogen-III synthase -
  IC772_RS17505 (IC772_17495) hemC 3777383..3778300 (-) 918 WP_191017850.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=483943 IC772_RS17480 WP_002053185.1 3773593..3773919(-) (hns) [Acinetobacter seifertii strain AS28]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=483943 IC772_RS17480 WP_002053185.1 3773593..3773919(-) (hns) [Acinetobacter seifertii strain AS28]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991