Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IC772_RS16980 Genome accession   NZ_CP061664
Coordinates   3660795..3663023 (+) Length   742 a.a.
NCBI ID   WP_191015906.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3655795..3668023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS16955 (IC772_16945) - 3657331..3657669 (-) 339 WP_000434938.1 tRNA-binding protein -
  IC772_RS16960 (IC772_16950) - 3657903..3658163 (+) 261 WP_191015901.1 DUF2798 domain-containing protein -
  IC772_RS16965 (IC772_16955) - 3658223..3658567 (-) 345 WP_019456903.1 hypothetical protein -
  IC772_RS16970 (IC772_16960) gspG 3658833..3659417 (-) 585 WP_191015903.1 type II secretion system major pseudopilin GspG -
  IC772_RS16975 (IC772_16965) gspF 3659441..3660646 (-) 1206 WP_191015904.1 type II secretion system inner membrane protein GspF -
  IC772_RS16980 (IC772_16970) priA 3660795..3663023 (+) 2229 WP_191015906.1 primosomal protein N' Machinery gene
  IC772_RS16985 (IC772_16975) - 3663099..3664940 (+) 1842 WP_191015908.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IC772_RS16990 (IC772_16980) - 3665106..3665981 (+) 876 WP_004699009.1 Hsp33 family molecular chaperone HslO -
  IC772_RS16995 (IC772_16985) - 3666118..3666729 (+) 612 WP_004699012.1 LysE family translocator -
  IC772_RS17000 (IC772_16990) - 3666880..3667839 (+) 960 WP_191015910.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83961.82 Da        Isoelectric Point: 8.5625

>NTDB_id=483940 IC772_RS16980 WP_191015906.1 3660795..3663023(+) (priA) [Acinetobacter seifertii strain AS28]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKVVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
MPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=483940 IC772_RS16980 WP_191015906.1 3660795..3663023(+) (priA) [Acinetobacter seifertii strain AS28]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCACGCGTCGCGATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAACGGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATCTATGGAAAATCATTC
CTTGTGACAATGTTGAAGCCTTGTTAAAGCGTTCCATTAAGCAACAAGATGCATATCAAATTTTAAAATTACATCCTGCC
GGAACTACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACTGCAACGCTTAAAGCACTTCAAAAGAAGGGATTGGTTGA
CTGCACACTCGAACCACACGACTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCACTTACCCTAAATGATGATCAAA
AGAAGGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTTTTAAAACAAGGTAAGCAAGTCCTAGTATTGGTTCCTGAAATTGGCTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATTGCTTTATTGCACTCTGGCTTAAATGACTCTA
AACGATTACAAGCATGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGAACTCGCTCAGCCATTTATACACCG
CTGCCACGTCTGGGCCTCATCATTTTAGATGAAGAACACGACCTGTCTTATAAGCAACAAGAAGGTTTCCGTTATCATGC
TCGTGATGTCGCACTGTACCGAGGCCACTTACAAAGCTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGCATCGACAGCT
ATCACTTAGTAGAAACTGGTAAGTTAACTTCACTGCAACTGAACCAGCGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATAGATCTTAAAGTTGTCAAAAAGCAGCATGGTATTAGCCAGCCTTTAATCGAGCAAATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGTTATGCACCTGTACTTGTGTGTGAAAGCTGTGGATGGCAAGCAA
ATTGTCCACATTGCGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTATTTACATTGTCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAATGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCTGGGACAGCTAAGGTTGAAGA
ACACTTACAAGAGTTATTCCCAGATTATGATGTGATTCGAGTCGATCGTGACAGCACCAGTCGTGTCGGTAGTTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCAACAATTTTGCTTGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTACTGAGTGTCGATATTCGGGCGCCAGAACGTACTGCGCA
GCTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCGGTTGCCAAACAAACATTAGCTGAACGTAAAGTTGCTTTA
ATGCCGCCTTATCGTTATGCAGTTTTAATTCGTGCTGAATCGAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGATATTGTTGATATTTGGGGGCCGATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCTGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTTAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.305

100

0.973