Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   IC772_RS03490 Genome accession   NZ_CP061664
Coordinates   712085..716605 (+) Length   1506 a.a.
NCBI ID   WP_191016617.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 707085..721605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS03465 (IC772_03465) - 707524..708162 (-) 639 WP_191016614.1 hypothetical protein -
  IC772_RS03470 (IC772_03470) pilG 708446..708829 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  IC772_RS03475 (IC772_03475) - 708853..709215 (+) 363 WP_004705774.1 PleD family two-component system response regulator -
  IC772_RS03480 (IC772_03480) - 709273..709809 (+) 537 WP_004705775.1 chemotaxis protein CheW -
  IC772_RS03485 (IC772_03485) - 709856..711937 (+) 2082 WP_191016616.1 methyl-accepting chemotaxis protein -
  IC772_RS03490 (IC772_03490) chpA 712085..716605 (+) 4521 WP_191016617.1 hybrid sensor histidine kinase/response regulator Regulator
  IC772_RS03495 (IC772_03495) - 716602..717069 (+) 468 WP_004705778.1 hypothetical protein -
  IC772_RS03500 (IC772_03500) - 717272..718663 (+) 1392 WP_191016619.1 coproporphyrinogen-III oxidase family protein -
  IC772_RS03505 (IC772_03505) - 718672..719553 (+) 882 WP_191016620.1 alpha/beta fold hydrolase -
  IC772_RS03510 (IC772_03510) dapE 719690..720823 (-) 1134 WP_191016622.1 succinyl-diaminopimelate desuccinylase -
  IC772_RS03515 (IC772_03515) - 720949..721092 (-) 144 WP_002051109.1 entericidin A/B family lipoprotein -

Sequence


Protein


Download         Length: 1506 a.a.        Molecular weight: 171386.95 Da        Isoelectric Point: 4.3762

>NTDB_id=483924 IC772_RS03490 WP_191016617.1 712085..716605(+) (chpA) [Acinetobacter seifertii strain AS28]
MKEILKTLTEAMTLPEDSYSEQDAEFLEIFVEEIDEIFVDLQPLLNEWMQSANTATLTEIRRHFHTLKGSGRMIGAKSSA
ELAWTVEDTLNRVINQSLKLTPAIQGYVQLVFKFYFLKLVDNFKQKRAHAVDFRPLILLGQQLQQQQSLEPALEELLQLS
NTLTAETITGLELDYIEQDLLAEPIVEDVHTEIEINLNETLALFMEEAEEHLSTINQFLNQELHQYDSYNALIRALHTLR
GSSAMAQVETIFEASTKVEHLFKILLQEELSSNSDEILLLQEYRDFIGESLELLSSNSSSEQLEARLAQFNQSWDAYVEQ
HGDRTDPLMPSHGLVSQLLLLDVSELLDAELDFEKGIRNEFPGYLERLSEQADLLLQHTHSQAMLGLHEYTSQLKDSYNV
LLDKPVLLQSDYIFEIYQKAHQQLIQLFDALAAGQRVGIVKQHQSILEELKLYTLHTPSIQNDLPHQNFTFDEPLFNTEL
EPEVITVENLSDSADWTVLSQSVQQDRQYISSAEVNRNFDPDLLDIFLEEADELLEGIDTDLNIWVGEQENFAALNNLMR
YLHTLKGGANMVQATYIGSITHELESIYERLIQKQLIATSPLIDFIRLIQDDLADRLQIMREKQLDYAAPYTINALKQAG
KNSNFQPVPEVEVFDAESEIFSEQEVVSQVLINEVPAETEVVVDELETHHDQVFDTVVTELATPVEVITSVESSQENEAL
VDEEDITVVVEQTFLEEAAELLEMADVLLKQWFDQRTNRSILLQLQRAVHSLKGGARMVGLEAVYAIAYQLENTFEQFAL
HHFNSNIYDHLLESAIAWLKDAIFKHNYQHFDGLQQSLENIQFFETNIQIPAKLTKADLFSSEPVMTFIQGDGTEPPPMM
GVWKQTERLDQNNEMIRVSADLIEKMIDLSGENSINRSRIEMDLSQFGHTLVEMELAIQRLADQLRRMEGELETQIIAKH
GIEHSRYTDFDPLEMDQYSSLNQLSKSLAESASDLVDFKNTLSHKIRDTESLLLQQSRIQAEIQEGLMRTRLVPFSRLLP
RLQRIVRQTSTALNRPAELFVNNTEGELDRNILERLVTPLEHMLRNAIDHGLEDRTQRQQANKPEAGRIELNIQRQGTDV
VVVFSDDGQGIDVEKVRQKALLAGLIKPEQHLEHQDILQLIFHPGLSTADQITQISGRGVGLDVVQSDIKALGGHVSVDS
FYGKGTTFTIRVPTTVAVSDALMVKVADQQFAIPLAQIDRIVRVSPASLEQYFESPKELFEYENKRYPLRYLSEFVGNQP
MPRLNGVMYSLPVLMIKANNGQTVALLVDQLIGSRAQIVVKPIGQQFASIGAIAGATILGDGQVCLILDGQNIARQIQST
PRHKQLSEAVYRQRESDERRLVMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVDAIEQLENIKPDLMLLDIEMPRMDGFE
VLNLVRHHDMHQYMPIIMITSRTGEKHRERAFSLGVSQYMGKPFQEEELLENIDALLVAFESEVKS

Nucleotide


Download         Length: 4521 bp        

>NTDB_id=483924 IC772_RS03490 WP_191016617.1 712085..716605(+) (chpA) [Acinetobacter seifertii strain AS28]
ATGAAAGAAATATTAAAAACTTTAACTGAAGCAATGACGCTACCTGAAGATAGCTATTCTGAACAAGATGCTGAGTTTCT
TGAGATTTTTGTCGAAGAAATTGATGAAATTTTTGTTGATTTGCAGCCATTGTTGAATGAATGGATGCAGTCTGCAAATA
CTGCTACGCTCACTGAAATTCGCCGCCATTTTCATACCTTAAAAGGTTCGGGGAGAATGATTGGTGCTAAATCTTCGGCC
GAGCTTGCTTGGACAGTTGAAGATACGCTCAATCGAGTAATCAATCAAAGCCTTAAGCTGACTCCAGCTATTCAAGGTTA
TGTTCAGTTAGTGTTTAAGTTCTATTTCCTTAAATTAGTAGATAACTTTAAGCAAAAACGAGCACATGCAGTAGATTTTA
GACCGCTTATTTTATTAGGCCAACAACTACAACAACAGCAAAGTTTAGAACCTGCTTTAGAAGAGCTTTTACAACTTTCA
AATACGCTTACTGCCGAAACAATCACTGGGCTTGAGCTAGACTATATTGAGCAAGATTTATTGGCTGAGCCAATTGTTGA
AGATGTACATACTGAAATTGAAATAAATCTAAATGAAACTTTAGCCTTGTTTATGGAAGAGGCGGAAGAGCATTTATCGA
CAATTAATCAGTTCTTGAATCAAGAACTACATCAGTATGATAGCTACAATGCTTTAATACGTGCTCTACATACTTTGCGT
GGCAGTTCTGCAATGGCGCAGGTTGAAACAATTTTTGAAGCCAGTACTAAAGTTGAGCACTTATTTAAAATCTTATTGCA
AGAGGAGCTTTCTTCTAATTCAGATGAGATTTTATTATTACAAGAATATCGTGATTTTATTGGCGAGAGCTTAGAACTGC
TATCTAGCAATAGTTCAAGTGAACAGCTTGAAGCGAGATTGGCGCAGTTTAATCAGTCATGGGATGCCTACGTGGAGCAA
CATGGTGATCGAACTGATCCATTAATGCCTTCACATGGTTTGGTGTCGCAATTATTGCTGCTAGATGTTTCTGAGTTACT
AGATGCGGAATTAGATTTTGAGAAAGGAATTCGTAACGAGTTTCCTGGTTATCTTGAACGTCTAAGTGAACAGGCTGATC
TGTTGCTACAGCATACTCACTCTCAAGCAATGCTTGGTTTGCATGAATATACGAGCCAATTGAAAGACAGCTATAATGTA
TTGCTTGATAAACCTGTCTTGTTGCAATCAGACTATATTTTTGAAATTTATCAGAAAGCGCATCAACAACTTATTCAATT
GTTCGATGCTTTAGCTGCTGGTCAGCGAGTCGGTATTGTTAAGCAACATCAAAGTATTCTAGAAGAATTAAAACTTTATA
CGTTACATACGCCGAGTATTCAAAACGATTTACCTCATCAGAATTTTACTTTTGATGAGCCACTATTCAATACTGAACTA
GAACCAGAAGTTATTACGGTAGAGAATTTATCAGATTCCGCCGACTGGACCGTATTAAGCCAGAGTGTACAGCAAGATCG
TCAGTATATTTCATCTGCAGAGGTAAATCGAAACTTTGATCCTGACCTTTTGGACATTTTCCTCGAAGAAGCTGATGAGC
TACTTGAGGGGATTGATACTGATCTCAATATATGGGTAGGTGAGCAAGAAAACTTTGCAGCTTTGAACAACTTAATGCGC
TATTTGCATACCTTGAAAGGGGGAGCAAATATGGTTCAGGCGACTTATATCGGTTCGATTACCCATGAATTAGAAAGCAT
ATATGAACGTTTAATTCAAAAGCAGTTAATTGCAACCTCACCTCTAATTGATTTTATTCGTTTGATTCAAGATGACTTGG
CCGATCGTCTACAAATCATGCGTGAAAAACAGCTAGATTATGCTGCTCCTTACACAATTAATGCGTTAAAACAAGCGGGT
AAAAACTCTAACTTCCAACCTGTGCCTGAGGTTGAAGTATTTGATGCTGAAAGTGAGATATTCTCTGAACAAGAGGTGGT
GTCTCAAGTATTAATAAATGAGGTACCAGCGGAAACAGAAGTTGTTGTTGACGAATTAGAAACTCATCACGATCAAGTAT
TTGATACCGTTGTTACTGAATTGGCTACGCCAGTTGAAGTAATAACATCAGTTGAATCCTCGCAAGAGAATGAAGCTCTA
GTTGACGAAGAAGATATTACCGTTGTTGTTGAGCAGACATTCCTAGAAGAAGCTGCTGAATTGCTAGAAATGGCTGATGT
GCTATTGAAACAATGGTTTGATCAGCGTACGAACCGTAGTATCTTGCTTCAGTTACAAAGAGCCGTGCACAGTTTGAAGG
GTGGTGCACGCATGGTCGGTTTAGAGGCCGTATATGCAATTGCTTATCAACTGGAAAATACTTTTGAACAGTTTGCACTG
CATCACTTCAACTCGAATATTTATGACCATCTGCTCGAAAGTGCAATTGCATGGCTAAAAGATGCAATTTTCAAGCACAA
CTACCAGCATTTCGATGGACTACAACAAAGTTTAGAAAATATTCAATTCTTTGAAACGAATATCCAAATTCCAGCGAAGT
TAACGAAAGCTGATTTGTTTAGCTCAGAACCTGTGATGACCTTTATACAAGGTGATGGTACCGAACCACCACCAATGATG
GGAGTATGGAAGCAAACAGAACGTCTGGATCAAAATAATGAAATGATCCGAGTTTCAGCAGACTTAATCGAGAAGATGAT
TGATTTATCTGGTGAAAATTCGATTAACCGTTCGCGAATTGAAATGGATCTAAGTCAGTTTGGTCATACATTGGTTGAAA
TGGAATTGGCTATTCAACGACTTGCCGATCAGTTACGTCGAATGGAAGGCGAGTTAGAAACACAAATTATTGCTAAACAT
GGTATTGAGCATTCTCGTTATACCGACTTTGACCCTTTAGAGATGGACCAATATTCATCTTTAAATCAGTTATCGAAATC
TCTTGCTGAATCTGCTTCGGACTTAGTTGACTTTAAAAATACGTTGTCTCACAAGATCAGAGATACAGAAAGTCTGCTTT
TACAACAGTCACGAATTCAGGCAGAAATTCAAGAAGGTTTGATGCGAACACGATTAGTTCCATTTTCACGGTTACTACCA
CGTTTACAGCGAATTGTTCGTCAGACCTCTACTGCATTGAACAGACCTGCTGAGCTTTTTGTAAATAATACTGAAGGTGA
ACTAGACCGTAATATTTTAGAGCGCTTGGTAACACCGCTTGAGCATATGCTCAGAAACGCAATTGACCATGGTTTAGAAG
ACAGAACACAACGTCAGCAAGCTAATAAACCTGAAGCTGGGCGTATTGAACTTAATATTCAACGTCAAGGTACAGATGTG
GTCGTTGTCTTTAGCGATGATGGACAAGGTATTGATGTAGAAAAAGTGCGTCAAAAAGCACTGCTTGCGGGTCTGATCAA
ACCGGAACAGCACTTGGAACACCAAGATATTTTACAACTGATTTTCCATCCGGGTTTAAGTACCGCAGATCAGATTACTC
AAATCTCTGGGCGTGGTGTTGGACTCGATGTTGTACAAAGCGACATTAAGGCTCTAGGTGGACATGTTAGCGTAGACTCT
TTTTATGGTAAGGGAACAACATTTACTATTCGTGTACCGACTACGGTAGCCGTAAGTGATGCCTTAATGGTGAAAGTGGC
AGATCAGCAATTTGCGATTCCACTTGCTCAAATCGATCGAATTGTTCGAGTTTCGCCAGCTTCTTTAGAGCAGTATTTTG
AAAGCCCTAAAGAACTATTCGAGTATGAAAATAAACGTTATCCATTACGTTATCTTTCAGAATTTGTGGGTAATCAACCA
ATGCCGCGTCTAAATGGCGTGATGTATTCATTACCTGTCTTAATGATTAAAGCCAACAATGGCCAAACTGTGGCTTTACT
TGTTGACCAGTTAATTGGTTCTCGAGCACAAATTGTAGTGAAACCAATTGGCCAACAGTTCGCTAGCATTGGGGCAATTG
CAGGTGCGACTATTTTAGGTGATGGACAAGTTTGCTTAATTTTAGATGGACAAAATATTGCGCGACAAATTCAGTCTACT
CCGCGTCATAAACAGCTTAGTGAAGCAGTATATAGACAACGTGAATCTGACGAGCGCCGTCTCGTTATGATTGTCGATGA
CTCAGTAACTGTACGTAAGGTAACGTCTCGATTACTTGAACGCCAAGGCTACGATGTTGTTACGGCTAAAGATGGTGTGG
ATGCCATAGAGCAGCTAGAAAACATTAAGCCAGATCTAATGCTACTTGATATTGAAATGCCGCGTATGGATGGTTTCGAA
GTACTGAATCTTGTACGACATCATGATATGCATCAATACATGCCAATTATTATGATTACGTCCCGAACAGGTGAAAAACA
TCGAGAACGAGCATTCTCATTAGGCGTAAGTCAATATATGGGTAAACCTTTCCAAGAGGAAGAATTACTAGAGAATATCG
ATGCTTTACTTGTAGCGTTTGAAAGTGAGGTCAAATCATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

91.374

100

0.914