Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IC772_RS02570 Genome accession   NZ_CP061664
Coordinates   521818..522702 (+) Length   294 a.a.
NCBI ID   WP_191016490.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516818..527702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS02545 (IC772_02545) - 517214..518461 (-) 1248 WP_004705421.1 YihY family inner membrane protein -
  IC772_RS02550 (IC772_02550) wrbA 518749..519342 (+) 594 WP_191017655.1 NAD(P)H:quinone oxidoreductase -
  IC772_RS02555 (IC772_02555) - 519396..519971 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  IC772_RS02560 (IC772_02560) - 520043..520756 (-) 714 WP_191016488.1 DUF3108 domain-containing protein -
  IC772_RS02565 (IC772_02565) - 520914..521585 (-) 672 WP_004705429.1 hypothetical protein -
  IC772_RS02570 (IC772_02570) tonB2 521818..522702 (+) 885 WP_191016490.1 energy transducer TonB Machinery gene
  IC772_RS02575 (IC772_02575) ybeY 522790..523269 (-) 480 WP_004705432.1 rRNA maturation RNase YbeY -
  IC772_RS02580 (IC772_02580) - 523546..524634 (-) 1089 WP_191016491.1 PhoH family protein -
  IC772_RS02585 (IC772_02585) miaB 524672..526123 (-) 1452 WP_100290173.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33607.48 Da        Isoelectric Point: 8.3836

>NTDB_id=483922 IC772_RS02570 WP_191016490.1 521818..522702(+) (tonB2) [Acinetobacter seifertii strain AS28]
MLKKRSLPIEPFLYWWQDRVFIVAIILAILLHTLVLLIHFAMPAPSEQSTKEIAISIRPAEDAVKHADFLAQADQQGSGT
FREAHRMSSNSPTPMTTDASMGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLESQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKASVRRGAPFGRFDSNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=483922 IC772_RS02570 WP_191016490.1 521818..522702(+) (tonB2) [Acinetobacter seifertii strain AS28]
ATGTTGAAAAAAAGAAGTCTTCCTATAGAGCCTTTTCTTTATTGGTGGCAAGACCGAGTCTTTATTGTCGCAATAATACT
CGCAATCTTGTTGCATACTCTTGTGCTGCTTATTCATTTTGCTATGCCTGCGCCGTCAGAGCAATCCACGAAAGAAATCG
CTATATCTATTCGTCCTGCGGAGGATGCTGTTAAGCATGCAGATTTTTTAGCGCAAGCAGACCAACAAGGTTCAGGAACT
TTTCGAGAGGCTCATCGGATGTCTAGTAATTCTCCGACGCCTATGACTACTGATGCTTCAATGGGAGAAGCTCAGTTAGA
AACTTTAGAAAAAGTACAGCAACAACGAGAACTTAAGTTTGAAGAAAAAGTACTTATGACTGTGTTGAGCTGGCAGAAAC
AAGCTGAGGAGAGTCAAAGAAAGAAAGCACTTGAGCAATTAGAAAGCCAGTTTCAAGCTAAAGCTGCAATGGTCGCGAGC
CTAGAAGCTCAATATTTACAACGTCAGCAAGATTTCAGTCGTCAACAAAAAATAAAAACAGTCGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATTTAGATAAGTTCCGTGAAAAGGTGGAGCTTTACGGTAACCGTTATTATCCAGAAGAAG
CTAAACAACAACAATTAAAAGGTGAAGTTCGCCTTATGGTGATTTTGAATGCTCAAGGGGGCATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGACATTCAGTTTTAGATGAAGCTGCAAAAGCTTCTGTACGTCGTGGTGCGCCATTTGGTCGTTTTGA
TAGCAATATGAAAGATATTTCTGAGCTACGTATTATTCGTACTTGGCGTTTTGATCCAGCTGAAGCTGAATTTGAGGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.558

100

0.946