Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   J7W01_RS19100 Genome accession   NZ_CP072525
Coordinates   3713734..3714867 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain YB-04     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3708734..3719867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS19060 (J7W01_19060) ywnA 3708868..3709269 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  J7W01_RS19065 (J7W01_19065) ureC 3709404..3711113 (-) 1710 WP_015714862.1 urease subunit alpha -
  J7W01_RS19070 (J7W01_19070) ureB 3711110..3711484 (-) 375 WP_041850426.1 urease subunit beta -
  J7W01_RS19075 (J7W01_19075) ureA 3711481..3711798 (-) 318 WP_003227724.1 urease subunit gamma -
  J7W01_RS19080 (J7W01_19080) - 3711993..3712151 (-) 159 WP_120363539.1 hypothetical protein -
  J7W01_RS19085 (J7W01_19085) - 3712355..3712618 (-) 264 WP_231573524.1 ABC transporter -
  J7W01_RS19090 (J7W01_19090) csbD 3712839..3713027 (-) 189 WP_015251021.1 stress response protein CsbD -
  J7W01_RS19095 (J7W01_19095) - 3713100..3713579 (-) 480 WP_003244390.1 hypothetical protein -
  J7W01_RS19100 (J7W01_19100) rapC 3713734..3714867 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  J7W01_RS19105 (J7W01_19105) moaA 3715059..3716084 (-) 1026 WP_043940213.1 GTP 3',8-cyclase MoaA -
  J7W01_RS19110 (J7W01_19110) fdhD 3716100..3716888 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  J7W01_RS19115 (J7W01_19115) - 3717121..3717282 (-) 162 WP_003227706.1 hypothetical protein -
  J7W01_RS19120 (J7W01_19120) ywmD 3717377..3718051 (-) 675 WP_003243553.1 VWA domain-containing protein -
  J7W01_RS19125 (J7W01_19125) - 3718104..3718244 (-) 141 WP_003227702.1 hypothetical protein -
  J7W01_RS19130 (J7W01_19130) ywmC 3718375..3719058 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=483889 J7W01_RS19100 WP_003227715.1 3713734..3714867(-) (rapC) [Bacillus subtilis strain YB-04]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=483889 J7W01_RS19100 WP_003227715.1 3713734..3714867(-) (rapC) [Bacillus subtilis strain YB-04]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCTGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424