Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IC774_RS18975 Genome accession   NZ_CP061655
Coordinates   3895024..3895350 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter seifertii strain AS33     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3890024..3900350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC774_RS18955 (IC774_18950) - 3890129..3890755 (-) 627 WP_049065291.1 FHA domain-containing protein -
  IC774_RS18960 (IC774_18955) gspD 3890796..3893072 (-) 2277 WP_077164322.1 type II secretion system secretin GspD -
  IC774_RS18965 (IC774_18960) - 3893114..3893950 (-) 837 WP_077169904.1 type II secretion system protein N -
  IC774_RS18970 (IC774_18965) gspN 3893950..3894693 (-) 744 WP_004699190.1 type II secretion system protein N -
  IC774_RS18975 (IC774_18970) hns 3895024..3895350 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  IC774_RS18980 (IC774_18975) - 3895544..3895984 (-) 441 WP_004699193.1 thioesterase family protein -
  IC774_RS18985 (IC774_18980) - 3895992..3897185 (-) 1194 WP_190977837.1 heme biosynthesis protein HemY -
  IC774_RS18990 (IC774_18985) - 3897195..3898034 (-) 840 WP_004699197.1 hypothetical protein -
  IC774_RS18995 (IC774_18990) - 3898043..3898810 (-) 768 WP_077169905.1 uroporphyrinogen-III synthase -
  IC774_RS19000 (IC774_18995) hemC 3898815..3899732 (-) 918 WP_190977836.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=483865 IC774_RS18975 WP_002053185.1 3895024..3895350(-) (hns) [Acinetobacter seifertii strain AS33]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=483865 IC774_RS18975 WP_002053185.1 3895024..3895350(-) (hns) [Acinetobacter seifertii strain AS33]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991