Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IC774_RS02450 Genome accession   NZ_CP061655
Coordinates   506776..507636 (+) Length   286 a.a.
NCBI ID   WP_191101749.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 501776..512636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC774_RS02425 (IC774_02425) - 502150..503397 (-) 1248 WP_004705421.1 YihY family inner membrane protein -
  IC774_RS02430 (IC774_02430) wrbA 503685..504278 (+) 594 WP_174740740.1 NAD(P)H:quinone oxidoreductase -
  IC774_RS02435 (IC774_02435) - 504332..504907 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  IC774_RS02440 (IC774_02440) - 504979..505692 (-) 714 WP_151749370.1 DUF3108 domain-containing protein -
  IC774_RS02445 (IC774_02445) - 505850..506520 (-) 671 Protein_477 hypothetical protein -
  IC774_RS02450 (IC774_02450) tonB2 506776..507636 (+) 861 WP_191101749.1 energy transducer TonB Machinery gene
  IC774_RS02455 (IC774_02455) ybeY 507724..508203 (-) 480 WP_004705432.1 rRNA maturation RNase YbeY -
  IC774_RS02460 (IC774_02460) - 508480..509568 (-) 1089 WP_190977797.1 PhoH family protein -
  IC774_RS02465 (IC774_02465) miaB 509606..511057 (-) 1452 WP_019456556.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32641.19 Da        Isoelectric Point: 6.7729

>NTDB_id=483847 IC774_RS02450 WP_191101749.1 506776..507636(+) (tonB2) [Acinetobacter seifertii strain AS33]
MEPFLYWWQDRVFIVAIILAILLHTLVLLIHFAMPAPSEQSTKEIAISIRPAEDAVKHADFLAQADQQGSGTFREAHRMS
SNSPTPMTTDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLESQFQAKAAMVASLEAQYLQR
QQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRLLESSGHSV
LDEAAKASVRRGAPFGRFDSNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 861 bp        

>NTDB_id=483847 IC774_RS02450 WP_191101749.1 506776..507636(+) (tonB2) [Acinetobacter seifertii strain AS33]
ATAGAGCCTTTTCTTTATTGGTGGCAAGACCGAGTCTTTATTGTTGCAATAATACTCGCAATCTTGTTGCATACTCTTGT
GCTGCTTATTCATTTTGCTATGCCTGCGCCGTCAGAGCAATCCACGAAAGAAATCGCTATATCTATTCGTCCTGCTGAGG
ATGCTGTTAAGCATGCAGATTTTTTAGCGCAAGCAGACCAACAAGGTTCAGGAACTTTTAGAGAGGCTCATCGGATGTCT
AGTAATTCTCCGACGCCTATGACAACTGATGCTTCGACGGGAGAAGCCCAGTTAGAAACTTTAGAAAAAGTACAGCAACA
AAGAGAACTTAAGTTTGAAGAAAAAGTACTCATGACTGTGTTGAGTTGGCAGAAACAAGCTGAGGAGAGTCAAAGAAAGA
AAGCACTTGAACAATTAGAAAGCCAGTTTCAAGCTAAAGCTGCAATGGTCGCGAGCCTAGAAGCTCAATATTTACAACGT
CAGCAAGATTTCAGTCGTCAACAAAAAATAAAAACAGTCGATGGTATTCAAGCCAAGAAAGATGCTTCAGCAGCTTATTT
AGATAAGTTCCGTGAAAAGGTGGAGCTTTACGGTAACCGTTATTATCCAGAAGAAGCTAAACAACAACAATTAAAAGGTG
AAGTTCGCCTTATGGTGATTTTGAATGCTCAAGGGGGCATTCGTGCAATTCGTTTACTTGAAAGTTCAGGACATTCAGTT
TTAGATGAAGCTGCAAAAGCTTCTGTACGCCGTGGTGCGCCATTTGGTCGTTTTGATAGCAATATGAAAGATATTTCTGA
GCTACGTATTATTCGTACTTGGCGTTTTGATCCAGCTGAAGCTGAATTTGAGGTACATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(199-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.755

100

0.948