Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   IC777_RS22120 Genome accession   NZ_CP061640
Coordinates   3072930..3073091 (-) Length   53 a.a.
NCBI ID   WP_410574411.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS40     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3065987..3073861 3072930..3073091 within 0


Gene organization within MGE regions


Location: 3065987..3073861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC777_RS14725 (IC777_14720) purM 3065987..3067057 (+) 1071 WP_000071984.1 phosphoribosylformylglycinamidine cyclo-ligase -
  IC777_RS14730 (IC777_14725) purN 3067054..3067683 (+) 630 WP_077169608.1 phosphoribosylglycinamide formyltransferase -
  IC777_RS14735 (IC777_14730) - 3067747..3068556 (-) 810 WP_039254611.1 alpha/beta fold hydrolase -
  IC777_RS14740 (IC777_14735) sppA 3068576..3069592 (-) 1017 WP_019457289.1 signal peptide peptidase SppA -
  IC777_RS14745 (IC777_14740) - 3069725..3070708 (+) 984 WP_077169609.1 lysophospholipid acyltransferase family protein -
  IC777_RS14750 (IC777_14745) - 3070661..3072927 (-) 2267 Protein_2910 DNA internalization-related competence protein ComEC/Rec2 -
  IC777_RS22120 comA/comEC 3072930..3073091 (-) 162 WP_410574411.1 hypothetical protein Machinery gene
  IC777_RS14755 (IC777_14750) lolD 3073175..3073861 (-) 687 WP_004699850.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 53 a.a.        Molecular weight: 6110.55 Da        Isoelectric Point: 6.4400

>NTDB_id=483792 IC777_RS22120 WP_410574411.1 3072930..3073091(-) (comA/comEC) [Acinetobacter seifertii strain AS40]
MFKIILLGWIGGIALMGIHLPLIMQYGEVAKVLLLLAFIFFFLNDQYLLVDHF

Nucleotide


Download         Length: 162 bp        

>NTDB_id=483792 IC777_RS22120 WP_410574411.1 3072930..3073091(-) (comA/comEC) [Acinetobacter seifertii strain AS40]
ATGTTTAAAATTATTCTATTGGGGTGGATTGGCGGTATTGCATTAATGGGTATTCATTTACCTTTAATCATGCAATATGG
AGAAGTAGCTAAAGTTCTACTTTTACTTGCCTTTATTTTTTTCTTTTTAAACGATCAGTATTTGTTGGTCGACCACTTCT
AA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

80.488

77.358

0.623
  comA/comEC Acinetobacter baumannii strain A118

80.488

77.358

0.623
  comA/comEC Acinetobacter baylyi ADP1

43.478

86.792

0.377