Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   J7W01_RS03715 Genome accession   NZ_CP072525
Coordinates   729466..730596 (+) Length   376 a.a.
NCBI ID   WP_041851216.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-04     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 724466..735596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS03700 (J7W01_03700) atxF 725583..726038 (-) 456 WP_072173434.1 TIGR01741 family protein -
  J7W01_RS03705 (J7W01_03705) yeeF 726058..728067 (-) 2010 WP_041851218.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  J7W01_RS03710 (J7W01_03710) - 728280..729302 (+) 1023 WP_041851217.1 hypothetical protein -
  J7W01_RS03715 (J7W01_03715) rapC 729466..730596 (+) 1131 WP_041851216.1 response regulator aspartate phosphatase RapH Regulator
  J7W01_RS03720 (J7W01_03720) phrH 730586..730759 (+) 174 WP_041851215.1 phosphatase RapH inhibitor PhrH -
  J7W01_RS03725 (J7W01_03725) yeeI 730919..731638 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  J7W01_RS03730 (J7W01_03730) - 731772..732200 (+) 429 WP_043940061.1 hypothetical protein -
  J7W01_RS03735 (J7W01_03735) yezE 732313..732897 (+) 585 WP_041851250.1 TetR/AcrR family transcriptional regulator -
  J7W01_RS03740 (J7W01_03740) yesE 732977..733420 (+) 444 WP_015715468.1 nuclear transport factor 2 family protein -
  J7W01_RS03745 (J7W01_03745) yesF 733417..734285 (+) 869 Protein_690 NAD-dependent epimerase/dehydratase family protein -
  J7W01_RS03750 (J7W01_03750) cotJA 734412..734660 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  J7W01_RS03755 (J7W01_03755) cotJB 734644..734907 (+) 264 WP_003219491.1 spore coat protein CotJB -
  J7W01_RS03760 (J7W01_03760) cotJC 734922..735491 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43962.34 Da        Isoelectric Point: 6.3903

>NTDB_id=483776 J7W01_RS03715 WP_041851216.1 729466..730596(+) (rapC) [Bacillus subtilis strain YB-04]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQRMEEDQDLLIYYSLMCFRHQLMLDYLEPGQPYGNRPTVT
ELLESIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLGAALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAATVFESSCHFEQAAKFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=483776 J7W01_RS03715 WP_041851216.1 729466..730596(+) (rapC) [Bacillus subtilis strain YB-04]
TTGAGTCAAGCCATACCGTCTTCGCGTGTCGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGAGGATGGAAGAGGATCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTCCGGCACCAGCTGATGCTGGATTATTTGGAGCCGGGACAACCTTACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAATCGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGGGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAAATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGCAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCACTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCTGCTAAGTTTTACCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(222-251)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.41
  rapF Bacillus subtilis subsp. subtilis str. 168

39.257

100

0.394