Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   J7W01_RS02795 Genome accession   NZ_CP072525
Coordinates   538512..539687 (+) Length   391 a.a.
NCBI ID   WP_209283717.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-04     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 533512..544687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS02775 (J7W01_02775) cwlT 534625..535614 (+) 990 WP_032730587.1 bifunctional lytic transglycosylase/C40 family peptidase -
  J7W01_RS02780 (J7W01_02780) - 535629..536135 (+) 507 WP_209283714.1 hypothetical protein -
  J7W01_RS02785 (J7W01_02785) - 536189..536581 (+) 393 WP_209283715.1 cystatin-like fold lipoprotein -
  J7W01_RS02790 (J7W01_02790) - 537044..538141 (+) 1098 WP_209283716.1 glycosyl hydrolase -
  J7W01_RS02795 (J7W01_02795) rapC 538512..539687 (+) 1176 WP_209283717.1 Rap family tetratricopeptide repeat protein Regulator
  J7W01_RS02800 (J7W01_02800) - 539819..541126 (-) 1308 WP_209283718.1 hypothetical protein -
  J7W01_RS02805 (J7W01_02805) - 541492..542412 (-) 921 Protein_507 tyrosine-type recombinase/integrase -
  J7W01_RS02810 (J7W01_02810) - 542371..542664 (+) 294 WP_231573529.1 cystatin-like fold lipoprotein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 46556.92 Da        Isoelectric Point: 4.7598

>NTDB_id=483773 J7W01_RS02795 WP_209283717.1 538512..539687(+) (rapC) [Bacillus subtilis strain YB-04]
MRSVFLDKDKIPYDLVTKRLNEWYTSIKNDQVEKAEIIKTEVEKELLNMEENQDALLYYQLLEFRHEIMLSYMESKEIDD
LNSAYETIKEIEEQGQLTGMLEYYYYFFKGMYEFRRKELTTAISAYRIAESKLSEVEDEIEKAEFFFKVSYVYYYMKQTY
FSMNYANRALKIFREYEEYAVQTVRCQFIVAGNLIDSLEYERALEQFLNSLEIAKESNIDHLIAMSHMNIGICYDELKEY
KKASQHLILALEIFEKSKHSFLTKALFTLTYVEAKQQNYDVALIYFRKGRFIADKSDDKEYSAKFKILEGLFFSDGETQL
IKNAFSYLASRKMFADVENFSIEVADYFHEQGNLMLSNEYYRMSIEARRKIKKGEIINENQPDSIGSSDFR

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=483773 J7W01_RS02795 WP_209283717.1 538512..539687(+) (rapC) [Bacillus subtilis strain YB-04]
TTGCGGAGTGTTTTCTTAGATAAAGATAAAATTCCGTACGACCTAGTTACAAAAAGGTTAAATGAATGGTATACATCAAT
AAAAAATGATCAAGTTGAAAAAGCAGAGATTATAAAAACAGAAGTAGAGAAAGAATTACTAAACATGGAAGAAAACCAAG
ATGCATTGTTATATTATCAGCTATTGGAATTTAGGCATGAGATAATGTTGAGTTACATGGAATCAAAGGAAATAGATGAT
CTGAACAGTGCTTATGAGACTATAAAAGAGATTGAAGAGCAAGGGCAATTAACCGGAATGCTGGAATACTATTATTATTT
TTTTAAAGGTATGTATGAATTTAGGCGTAAAGAATTGACTACGGCGATAAGTGCCTATCGAATAGCAGAATCAAAGTTGT
CGGAAGTTGAGGACGAAATAGAAAAAGCAGAGTTTTTTTTCAAAGTGTCTTATGTGTATTATTATATGAAACAAACGTAT
TTCTCCATGAATTATGCAAATCGCGCACTCAAAATATTTAGAGAGTATGAAGAGTATGCTGTCCAAACTGTGCGTTGTCA
ATTTATTGTAGCAGGAAACCTGATCGATTCTTTAGAATATGAAAGAGCCTTGGAACAATTTTTGAATTCTTTAGAAATTG
CCAAGGAAAGTAACATAGATCATTTAATTGCAATGTCACACATGAATATTGGAATTTGTTATGATGAATTGAAGGAATAT
AAAAAGGCTTCACAACATTTAATCTTGGCGTTAGAAATTTTTGAAAAATCAAAACATAGTTTCCTAACAAAGGCTTTATT
CACTTTAACCTATGTTGAAGCAAAACAACAAAATTATGATGTTGCTTTGATATACTTTAGGAAAGGGCGATTTATTGCCG
ATAAAAGTGATGATAAGGAATACTCAGCGAAATTCAAAATATTAGAGGGATTATTTTTTTCTGATGGTGAGACTCAATTA
ATAAAGAATGCATTTTCATATCTGGCTTCGAGAAAAATGTTTGCTGATGTTGAAAATTTTTCGATTGAAGTCGCTGATTA
TTTTCATGAACAAGGAAATTTAATGCTCTCTAATGAATATTATCGTATGAGTATTGAAGCAAGACGAAAAATTAAAAAAG
GGGAGATTATTAATGAAAATCAGCCGGATTCTATTGGCAGCAGTGATTTTAGGTAG

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(199-256)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(10-70)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

38.235

95.652

0.366