Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   J7W01_RS02370 Genome accession   NZ_CP072525
Coordinates   467597..468031 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain YB-04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 462597..473031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7W01_RS02340 (J7W01_02340) ydaD 463245..464105 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  J7W01_RS02345 (J7W01_02345) lyxE 464121..464624 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  J7W01_RS02350 (J7W01_02350) ydaF 464712..465263 (+) 552 WP_041850710.1 GNAT family protein -
  J7W01_RS02355 (J7W01_02355) ydaG 465341..465763 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  J7W01_RS02360 (J7W01_02360) amj 466269..467078 (+) 810 WP_209283699.1 lipid II flippase Amj family protein -
  J7W01_RS02365 (J7W01_02365) ydzA 467122..467412 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  J7W01_RS02370 (J7W01_02370) lrpC 467597..468031 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  J7W01_RS02375 (J7W01_02375) topB 468096..470279 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  J7W01_RS02380 (J7W01_02380) ephJ 470482..471570 (+) 1089 WP_003246551.1 lipoprotein -
  J7W01_RS02385 (J7W01_02385) epsK 471551..472402 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=483772 J7W01_RS02370 WP_003246585.1 467597..468031(+) (lrpC) [Bacillus subtilis strain YB-04]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=483772 J7W01_RS02370 WP_003246585.1 467597..468031(+) (lrpC) [Bacillus subtilis strain YB-04]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1