Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   J7S31_RS04265 Genome accession   NZ_CP072523
Coordinates   852721..853791 (-) Length   356 a.a.
NCBI ID   WP_032461841.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SHZ-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 847721..858791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7S31_RS04245 (J7S31_04235) citX 848299..848877 (+) 579 WP_011054513.1 citrate lyase holo-[acyl-carrier protein] synthase -
  J7S31_RS04250 (J7S31_04240) - 848892..850286 (+) 1395 WP_002991774.1 oxaloacetate decarboxylase subunit alpha -
  J7S31_RS04255 (J7S31_04245) citC 850397..851449 (-) 1053 WP_011054514.1 [citrate (pro-3S)-lyase] ligase -
  J7S31_RS04260 (J7S31_04250) - 851538..852020 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  J7S31_RS04265 (J7S31_04255) xerS 852721..853791 (-) 1071 WP_032461841.1 tyrosine recombinase XerS Machinery gene
  J7S31_RS04270 (J7S31_04260) - 854261..854959 (+) 699 WP_002993300.1 S24 family peptidase -
  J7S31_RS04275 (J7S31_04265) ffh 855094..856656 (-) 1563 WP_011054515.1 signal recognition particle protein -
  J7S31_RS04280 (J7S31_04270) - 856671..857003 (-) 333 WP_002989745.1 putative DNA-binding protein -
  J7S31_RS04285 (J7S31_04275) - 857101..857799 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41505.58 Da        Isoelectric Point: 9.5552

>NTDB_id=483701 J7S31_RS04265 WP_032461841.1 852721..853791(-) (xerS) [Streptococcus pyogenes strain SHZ-1]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGFSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=483701 J7S31_RS04265 WP_032461841.1 852721..853791(-) (xerS) [Streptococcus pyogenes strain SHZ-1]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTACAAGGCTATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAATTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGTTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGACCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCATAAATTGCGTCATACGCTAGCGACAAGACTATATGATGCTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(177-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806