Detailed information NTG0048370

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AVCA_RS17590
• Genome accession: NC_021149
• Coordinates: 3912694..3913698 (-)
• Length: 334 a.a.
• NCBI ID: WP_012702383.1
• Uniprot ID: C1DSR5
• Organism: Azotobacter vinelandii CA
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3907694..3918698

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVCA_RS17575 (AvCA_38650)	fdxA	3909879..3910202 (+)	324	WP_012702380.1	ferredoxin FdxA	-
AVCA_RS17580 (AvCA_38660)	-	3910494..3911049 (-)	556	Protein_3554	methyl-accepting chemotaxis protein	-
AVCA_RS17585 (AvCA_38670)	-	3911128..3912069 (-)	942	WP_012702382.1	PAS domain-containing protein	-
AVCA_RS17590 (AvCA_38680)	rpoS	3912694..3913698 (-)	1005	WP_012702383.1	RNA polymerase sigma factor RpoS	Regulator
AVCA_RS25390 (AvCA_38690)	-	3913798..3914652 (-)	855	WP_012702384.1	peptidoglycan DD-metalloendopeptidase family protein	-
AVCA_RS27300	-	3914698..3914883 (-)	186	WP_367888945.1	undecaprenyl phosphate translocase family protein	-
AVCA_RS17600 (AvCA_38700)	-	3915088..3915768 (-)	681	WP_012702385.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
AVCA_RS17605 (AvCA_38710)	surE	3915768..3916517 (-)	750	WP_012702386.1	5'/3'-nucleotidase SurE	-
AVCA_RS17610 (AvCA_38720)	truD	3916505..3917563 (-)	1059	WP_012702387.1	tRNA pseudouridine(13) synthase TruD	-
AVCA_RS17615 (AvCA_38730)	ispF	3917560..3918033 (-)	474	WP_012702388.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38305.67 Da
• Isoelectric Point: 4.7697

>NTDB_id=48370 AVCA_RS17590 WP_012702383.1 3912694..3913698(-) (rpoS) [Azotobacter vinelandii CA]
MALNIKAKEAPEFDVDDDVLLMDADIVLEDVLDDEPDLPVAKSRQANLKQHKYIDYTRALDATQLYLNEIGFSPLLTPAE
EVHFARLAQRGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTQKLDHEPSAEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DVLTDDRPSDPCDLLQDDDLSQSIDQWLFDLTEKQREVVVRRFGLRGHESCTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=48370 AVCA_RS17590 WP_012702383.1 3912694..3913698(-) (rpoS) [Azotobacter vinelandii CA]
ATGGCTCTCAATATAAAAGCAAAAGAAGCGCCGGAGTTTGATGTAGACGATGATGTGCTCCTGATGGACGCCGACATCGT
GCTGGAGGATGTCCTGGACGATGAGCCGGACCTCCCCGTCGCGAAGTCCAGGCAGGCGAACCTGAAGCAGCACAAGTACA
TCGACTACACTAGGGCGCTGGATGCGACCCAGCTCTACCTCAACGAAATCGGCTTCTCGCCGCTGCTGACACCAGCGGAG
GAAGTGCATTTCGCGCGGCTGGCGCAGCGGGGAGACCCGGCTGGCCGCAAGCGGATGATCGAAAGCAACCTGCGACTGGT
GGTCAAGATCGCCCGCCGCTATGTCAACCGGGGCCTGTCGCTGCTCGATCTGATCGAGGAGGGGAATCTAGGCCTGATCC
GGGCAGTGGAGAAGTTCGATCCGGAACGCGGCTTCCGTTTCTCGACCTACGCCACCTGGTGGATTCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGCACCATTCGTCTGCCGATCCATGTGGTCAAGGAGCTCAATGTCTATCTACGGGCGGC
GCGTGAACTGACCCAGAAGCTCGATCACGAGCCTTCGGCGGAAGAGATCGCCAACCTGCTGGAAAAACCGGTCGCCGAGG
TCAAGCGCATGCTCGGACTCAACGAGCGGGTCACCTCGGTCGATGTCTCGCTGGGTCCGGATTCGGACAAGACCCTGCTC
GACGTGCTGACCGACGATCGCCCCTCCGATCCCTGTGACCTGCTGCAGGACGATGATTTGTCGCAGAGTATCGACCAGTG
GCTGTTCGACCTGACCGAGAAGCAGCGGGAAGTCGTGGTGCGTCGTTTCGGTCTGCGCGGCCACGAGAGTTGTACGCTGG
AGGAGGTGGGGCAGGAGATCGGCCTGACCCGCGAGCGGGTTCGCCAGATCCAGGTCGAGGCGCTCAAGCGTTTGCGGGAG
ATCCTCGAGAAGAATGGCCTTTCCAGCGATGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70 region 3 (Sigma70_r3) (179-253)

3D structure

• AlphaFold DB: C1DSR5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	63.205	100	0.638