Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | IC780_RS08640 | Genome accession | NZ_CP061629 |
| Coordinates | 1807048..1807428 (+) | Length | 126 a.a. |
| NCBI ID | WP_019458993.1 | Uniprot ID | - |
| Organism | Acinetobacter seifertii strain AS47 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1802048..1812428
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IC780_RS08610 (IC780_08605) | kdsB | 1802953..1803714 (+) | 762 | WP_049064951.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| IC780_RS08615 (IC780_08610) | - | 1803726..1804706 (+) | 981 | WP_077168508.1 | DNA polymerase III subunit delta' | - |
| IC780_RS08620 (IC780_08615) | - | 1804719..1805060 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| IC780_RS08625 (IC780_08620) | - | 1805078..1805851 (+) | 774 | WP_077168509.1 | TatD family hydrolase | - |
| IC780_RS08630 (IC780_08625) | - | 1805889..1806497 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| IC780_RS08635 (IC780_08630) | - | 1806507..1807058 (+) | 552 | WP_004701984.1 | type II secretion system protein | - |
| IC780_RS08640 (IC780_08635) | xcpV | 1807048..1807428 (+) | 381 | WP_019458993.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| IC780_RS08645 (IC780_08640) | xcpW | 1807428..1808243 (+) | 816 | WP_077168510.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| IC780_RS08650 (IC780_08645) | gspK | 1808243..1809199 (+) | 957 | WP_077168511.1 | type II secretion system minor pseudopilin GspK | - |
| IC780_RS08655 (IC780_08650) | - | 1809429..1810025 (+) | 597 | WP_077168512.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| IC780_RS08660 (IC780_08655) | ung | 1810076..1810789 (+) | 714 | WP_077168513.1 | uracil-DNA glycosylase | - |
| IC780_RS08665 (IC780_08660) | - | 1810786..1811910 (+) | 1125 | WP_019458997.1 | enoyl-CoA hydratase/isomerase family protein | - |
| IC780_RS08670 (IC780_08665) | tadA | 1811918..1812421 (+) | 504 | WP_031944487.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13976.19 Da Isoelectric Point: 9.4463
>NTDB_id=483693 IC780_RS08640 WP_019458993.1 1807048..1807428(+) (xcpV) [Acinetobacter seifertii strain AS47]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=483693 IC780_RS08640 WP_019458993.1 1807048..1807428(+) (xcpV) [Acinetobacter seifertii strain AS47]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
96.032 |
100 |
0.96 |