Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | IC781_RS08590 | Genome accession | NZ_CP061626 |
| Coordinates | 1805576..1805956 (+) | Length | 126 a.a. |
| NCBI ID | WP_019458993.1 | Uniprot ID | - |
| Organism | Acinetobacter seifertii strain AS48 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1800576..1810956
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IC781_RS08560 (IC781_08560) | kdsB | 1801481..1802242 (+) | 762 | WP_191011347.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| IC781_RS08565 (IC781_08565) | - | 1802254..1803234 (+) | 981 | WP_191011349.1 | DNA polymerase III subunit delta' | - |
| IC781_RS08570 (IC781_08570) | - | 1803247..1803588 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| IC781_RS08575 (IC781_08575) | - | 1803606..1804379 (+) | 774 | WP_077168509.1 | TatD family hydrolase | - |
| IC781_RS08580 (IC781_08580) | - | 1804417..1805025 (+) | 609 | WP_058061711.1 | TetR/AcrR family transcriptional regulator | - |
| IC781_RS08585 (IC781_08585) | - | 1805035..1805586 (+) | 552 | WP_004701984.1 | type II secretion system protein | - |
| IC781_RS08590 (IC781_08590) | xcpV | 1805576..1805956 (+) | 381 | WP_019458993.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| IC781_RS08595 (IC781_08595) | xcpW | 1805956..1806771 (+) | 816 | WP_191011350.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| IC781_RS08600 (IC781_08600) | gspK | 1806771..1807730 (+) | 960 | WP_174739125.1 | type II secretion system minor pseudopilin GspK | - |
| IC781_RS08605 (IC781_08605) | - | 1807960..1808556 (+) | 597 | WP_191011352.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| IC781_RS08610 (IC781_08610) | ung | 1808607..1809320 (+) | 714 | WP_004701973.1 | uracil-DNA glycosylase | - |
| IC781_RS08615 (IC781_08615) | - | 1809317..1810441 (+) | 1125 | WP_019458997.1 | enoyl-CoA hydratase/isomerase family protein | - |
| IC781_RS08620 (IC781_08620) | tadA | 1810449..1810952 (+) | 504 | WP_191011354.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13976.19 Da Isoelectric Point: 9.4463
>NTDB_id=483646 IC781_RS08590 WP_019458993.1 1805576..1805956(+) (xcpV) [Acinetobacter seifertii strain AS48]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=483646 IC781_RS08590 WP_019458993.1 1805576..1805956(+) (xcpV) [Acinetobacter seifertii strain AS48]
ATGAAATCTAAAGGCTTTACCCTATTAGAGGTTATGGTAGCTCTTGCAATCTTTGCAGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACACAGTCTACTTCTAATGCGATTTTACGAACTAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAACCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATCAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTATTAGAGGTTATGGTAGCTCTTGCAATCTTTGCAGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACACAGTCTACTTCTAATGCGATTTTACGAACTAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAACCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATCAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
96.032 |
100 |
0.96 |