Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IC781_RS01940 Genome accession   NZ_CP061626
Coordinates   423271..425499 (-) Length   742 a.a.
NCBI ID   WP_068935757.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS48     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418271..430499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC781_RS01920 (IC781_01920) - 418452..419413 (-) 962 Protein_367 DnaJ C-terminal domain-containing protein -
  IC781_RS01925 (IC781_01925) - 419564..420175 (-) 612 WP_019456899.1 LysE family translocator -
  IC781_RS01930 (IC781_01930) - 420313..421188 (-) 876 WP_004699009.1 Hsp33 family molecular chaperone HslO -
  IC781_RS01935 (IC781_01935) - 421354..423195 (-) 1842 WP_191010764.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IC781_RS01940 (IC781_01940) priA 423271..425499 (-) 2229 WP_068935757.1 primosomal protein N' Machinery gene
  IC781_RS01945 (IC781_01945) gspF 425648..426853 (+) 1206 WP_100192273.1 type II secretion system inner membrane protein GspF -
  IC781_RS01950 (IC781_01950) gspG 426877..427461 (+) 585 WP_191011463.1 type II secretion system major pseudopilin GspG -
  IC781_RS01955 (IC781_01955) - 427727..428071 (+) 345 WP_019456903.1 hypothetical protein -
  IC781_RS01960 (IC781_01960) - 428131..428391 (-) 261 WP_019456904.1 DUF2798 domain-containing protein -
  IC781_RS01965 (IC781_01965) - 428625..428963 (+) 339 WP_000434938.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83998.87 Da        Isoelectric Point: 8.5625

>NTDB_id=483636 IC781_RS01940 WP_068935757.1 423271..425499(-) (priA) [Acinetobacter seifertii strain AS48]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=483636 IC781_RS01940 WP_068935757.1 423271..425499(-) (priA) [Acinetobacter seifertii strain AS48]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCACGCGTCGCGATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAACGGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATCTATGGAAAATCATTC
CTTGTGACAATGTTGAAGCCTTGTTAAAGCGTTCCATTAAGCAACAAGATGCGTATCAGATTTTAAAATTACATCCTGCC
GGAACTACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCGCTACAAAAGAAAGGACTCATAGA
CTGTACACTTGAGCCTCATGATTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCGCTTACGCTAAATGATGATCAAA
AGAAGGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCATGAGGTGTTAAAACAAGGTAAGCAAGTCCTAGTATTGGTTCCTGAAATTGGCTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGTGATATTGCTTTATTGCATTCAGGCTTAAATGACTCTA
AACGCTTACAAGCATGGCAACAGGCACAAACTGGCAAAGCCTCTATTATTTTAGGAACTCGCTCAGCCATTTATACGCCG
CTGCCACGTCTGGGCCTCATCATTTTAGATGAAGAACATGACCTGTCTTATAAACAGCAAGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCACTGTACCGAGGCCACTTACAAAACTGCCCTGTTATTTTAGGTTCAGCAACACCAAGCATAGATAGCT
ATCATTTAGTAGAAACTGGTAAGTTAACTTCACTGCAACTGAACCAGCGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATCGATCTTAAAATTGTCAAAAAGCAGCATGGAATTAGCCAGCCTTTAATCGAGCAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGTTATGCACCTGTACTTGTGTGTGAAAGCTGTGGATGGCAAGCAA
ATTGCCCACATTGCGATGCGCATTTTACGTTGCATACTCAGCCTTATTCTTATTTACATTGTCACCACTGCGGTACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCAGGAACAGCCAAAGTTGAAGA
ACACTTACAAGAACTCTTTCCAGACTATGATGTGATTCGTGTTGACCGTGACAGTACAAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCCACAATTTTGCTTGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCGGGTTTACTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCACA
GTTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCAGTCGCAAAACAAACTCTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGTTATGCAGTCTTAATTCGTGCTGAGTCAAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCCGAACAGCTTCGCCAAATTGCAGGTGATATTGTTGATATTTGGGGGCCGATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTCAGGCTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.439

100

0.974