Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | IC782_RS08650 | Genome accession | NZ_CP061620 |
| Coordinates | 1808224..1808604 (+) | Length | 126 a.a. |
| NCBI ID | WP_019458993.1 | Uniprot ID | - |
| Organism | Acinetobacter seifertii strain AS49 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1803224..1813604
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IC782_RS08620 (IC782_08615) | kdsB | 1804129..1804890 (+) | 762 | WP_049064951.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| IC782_RS08625 (IC782_08620) | - | 1804902..1805882 (+) | 981 | WP_077168508.1 | DNA polymerase III subunit delta' | - |
| IC782_RS08630 (IC782_08625) | - | 1805895..1806236 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| IC782_RS08635 (IC782_08630) | - | 1806254..1807027 (+) | 774 | WP_077168509.1 | TatD family hydrolase | - |
| IC782_RS08640 (IC782_08635) | - | 1807065..1807673 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| IC782_RS08645 (IC782_08640) | - | 1807683..1808234 (+) | 552 | WP_004701984.1 | type II secretion system protein | - |
| IC782_RS08650 (IC782_08645) | xcpV | 1808224..1808604 (+) | 381 | WP_019458993.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| IC782_RS08655 (IC782_08650) | xcpW | 1808604..1809419 (+) | 816 | WP_077168510.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| IC782_RS08660 (IC782_08655) | gspK | 1809419..1810375 (+) | 957 | WP_077168511.1 | type II secretion system minor pseudopilin GspK | - |
| IC782_RS08665 (IC782_08660) | - | 1810605..1811201 (+) | 597 | WP_077168512.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| IC782_RS08670 (IC782_08665) | ung | 1811252..1811965 (+) | 714 | WP_077168513.1 | uracil-DNA glycosylase | - |
| IC782_RS08675 (IC782_08670) | - | 1811962..1813086 (+) | 1125 | WP_019458997.1 | enoyl-CoA hydratase/isomerase family protein | - |
| IC782_RS08680 (IC782_08675) | tadA | 1813094..1813595 (+) | 502 | Protein_1697 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13976.19 Da Isoelectric Point: 9.4463
>NTDB_id=483608 IC782_RS08650 WP_019458993.1 1808224..1808604(+) (xcpV) [Acinetobacter seifertii strain AS49]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=483608 IC782_RS08650 WP_019458993.1 1808224..1808604(+) (xcpV) [Acinetobacter seifertii strain AS49]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
96.032 |
100 |
0.96 |