Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IC788_RS16380 Genome accession   NZ_CP061596
Coordinates   3478691..3480919 (+) Length   742 a.a.
NCBI ID   WP_191000778.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS59     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3473691..3485919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS16355 (IC788_16355) - 3475229..3475567 (-) 339 WP_134262189.1 tRNA-binding protein -
  IC788_RS16360 (IC788_16360) - 3475799..3476059 (+) 261 WP_019456904.1 DUF2798 domain-containing protein -
  IC788_RS16365 (IC788_16365) - 3476119..3476463 (-) 345 WP_019456903.1 hypothetical protein -
  IC788_RS16370 (IC788_16370) gspG 3476729..3477313 (-) 585 WP_039251176.1 type II secretion system major pseudopilin GspG -
  IC788_RS16375 (IC788_16375) gspF 3477337..3478542 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  IC788_RS16380 (IC788_16380) priA 3478691..3480919 (+) 2229 WP_191000778.1 primosomal protein N' Machinery gene
  IC788_RS16385 (IC788_16385) - 3480995..3482836 (+) 1842 WP_191000779.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IC788_RS16390 (IC788_16390) - 3483002..3483877 (+) 876 WP_004699009.1 Hsp33 family molecular chaperone HslO -
  IC788_RS16395 (IC788_16395) - 3484015..3484626 (+) 612 WP_004699012.1 LysE family translocator -
  IC788_RS16400 (IC788_16400) - 3484777..3485739 (+) 963 WP_191000780.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83984.84 Da        Isoelectric Point: 8.5625

>NTDB_id=483453 IC788_RS16380 WP_191000778.1 3478691..3480919(+) (priA) [Acinetobacter seifertii strain AS59]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=483453 IC788_RS16380 WP_191000778.1 3478691..3480919(+) (priA) [Acinetobacter seifertii strain AS59]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCACGCGTCGCGATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCGATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAACAGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATCTATGGAAAATCATTC
CTTGTGACAATGTTGAAGCCTTGTTAAAGCGTTCCATTAAGCAACAAGATGCGTATCAGATTTTAAAATTACATCCTGCC
GGAACTACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCGTTACAAAAGAAAGGACTCATAGA
CTGTACACTTGAGCCTCATGATTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCACTTACCCTAAATGATGATCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGTTAAAACAAGGTAAGCAAGTCCTAGTATTGGTTCCTGAAATTGGCTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATTGCTTTATTGCATTCAGGCTTAAATGACTCTA
AACGATTACAAGCATGGCAACAGGCACAGACTGGTAAAGCATCTATTATTTTAGGAACTCGTTCCGCCATTTATACGCCG
CTGCCACGTCTGGGCCTCATTATTTTAGATGAAGAACATGACCTGTCTTATAAGCAACAAGAAGGTTTCCGTTATCATGC
TCGTGATGTCGCACTGTACCGAGGCCACTTACAAAGCTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGTATCGACAGCT
ATCACTTAGTAGAAACTGGTAAGTTAACTTCACTGCAACTGAACCAGCGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATAGATCTTAAAATTGTCAAAAAGCAGCATGGAATTAGCCAGCCTTTAATCGAGCAAATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGTTATGCACCTGTATTGGTTTGTGAAAGCTGTGGATGGCAAGCAA
ATTGCCCACATTGCGATGCGCATTTTACGTTGCATACTCAGCCTTATTCTTATTTGCATTGTCACCACTGCGGCACGGTT
CATCGCTTGCCAGACCACTGCCCTGAATGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCCGGAACAGCTAAGGTTGAAGA
ACACTTACAAGAACTATTCCCAGACTATGATGTGATTCGTGTTGACCGTGACAGTACAAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCCACAATTTTGCTTGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTACTAAGTGTCGATATTCGTGCGCCAGAACGTACTGCACA
GTTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACTACACTCATCGAAAAAGATTATCGGGCAGTCGCAAAACAAACATTAGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGTTATGCAGTCTTAATTCGTGCTGAGTCGAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCCGAACAGCTTCGCCAAATTGCAGGTGATATTGTTGATATTTGGGGGCCGATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAA
TTGGTTCATGCACCAAGACAGCATCAACTTAGACTCTCTATTGATGTTGATCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.305

100

0.973