Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IC788_RS02360 Genome accession   NZ_CP061596
Coordinates   482051..482935 (+) Length   294 a.a.
NCBI ID   WP_191001084.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477051..487935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS02335 (IC788_02335) - 477447..478694 (-) 1248 WP_004705421.1 YihY family inner membrane protein -
  IC788_RS02340 (IC788_02340) wrbA 478982..479575 (+) 594 WP_174724368.1 NAD(P)H:quinone oxidoreductase -
  IC788_RS02345 (IC788_02345) - 479629..480204 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  IC788_RS02350 (IC788_02350) - 480276..480989 (-) 714 WP_151749370.1 DUF3108 domain-containing protein -
  IC788_RS02355 (IC788_02355) - 481147..481818 (-) 672 WP_134262362.1 hypothetical protein -
  IC788_RS02360 (IC788_02360) tonB2 482051..482935 (+) 885 WP_191001084.1 energy transducer TonB Machinery gene
  IC788_RS02365 (IC788_02365) ybeY 483011..483502 (-) 492 WP_191001085.1 rRNA maturation RNase YbeY -
  IC788_RS02370 (IC788_02370) - 483779..484867 (-) 1089 WP_004705435.1 PhoH family protein -
  IC788_RS02375 (IC788_02375) miaB 484905..486356 (-) 1452 WP_068935662.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33591.42 Da        Isoelectric Point: 8.3836

>NTDB_id=483435 IC788_RS02360 WP_191001084.1 482051..482935(+) (tonB2) [Acinetobacter seifertii strain AS59]
MLKKRSLPIEPFLYWWQDRVFIVAIILAILLHTLLLLIHFAMPAPSEQSTKEIAISIRPAEDAVKHADFLAQADQQGSGT
FREAHRMSSNSPTPMTTDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLESQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKASVRRGAPFGRFDSNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=483435 IC788_RS02360 WP_191001084.1 482051..482935(+) (tonB2) [Acinetobacter seifertii strain AS59]
ATGTTGAAAAAAAGAAGTCTTCCTATAGAGCCTTTTCTTTATTGGTGGCAAGACCGAGTCTTTATTGTTGCAATAATACT
CGCAATCTTGTTGCATACTCTTTTGCTGCTTATTCATTTTGCTATGCCTGCGCCGTCAGAGCAATCCACGAAAGAAATCG
CTATATCTATTCGTCCTGCTGAGGACGCTGTTAAGCATGCAGATTTTTTAGCGCAAGCAGACCAACAAGGTTCAGGAACT
TTTAGAGAGGCTCATCGGATGTCTAGTAATTCTCCGACGCCTATGACAACTGATGCTTCGACGGGAGAAGCCCAGTTAGA
AACTTTAGAAAAAGTACAGCAACAAAGAGAACTTAAGTTTGAAGAAAAAGTACTCATGACTGTGTTGAGTTGGCAGAAAC
AAGCTGAGGAGAGTCAAAGAAAGAAAGCACTTGAACAATTAGAAAGCCAGTTTCAAGCTAAAGCTGCAATGGTCGCGAGC
CTAGAAGCTCAATATTTACAACGTCAGCAAGATTTCAGTCGTCAACAAAAAATAAAAACAGTCGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATTTAGATAAGTTCCGTGAAAAGGTGGAGCTTTACGGTAACCGTTATTATCCAGAAGAAG
CTAAACAACAACAATTAAAAGGTGAAGTTCGCCTTATGGTGATTTTGAATGCTCAAGGGGGCATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGACATTCAGTTTTAGATGAAGCTGCAAAAGCTTCTGTACGCCGTGGTGCGCCATTTGGTCGTTTTGA
TAGCAATATGAAAGATATTTCTGAGCTACGTATTATTCGTACTTGGCGTTTTGATCCAGCTGAAGCTGAATTTGAGGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.558

100

0.946