Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IC789_RS08875 Genome accession   NZ_CP061592
Coordinates   1863061..1863441 (+) Length   126 a.a.
NCBI ID   WP_019458993.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS60     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1858061..1868441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC789_RS08845 (IC789_08840) kdsB 1858966..1859727 (+) 762 WP_049064951.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IC789_RS08850 (IC789_08845) - 1859739..1860719 (+) 981 WP_077168508.1 DNA polymerase III subunit delta' -
  IC789_RS08855 (IC789_08850) - 1860732..1861073 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  IC789_RS08860 (IC789_08855) - 1861091..1861864 (+) 774 WP_077168509.1 TatD family hydrolase -
  IC789_RS08865 (IC789_08860) - 1861902..1862510 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IC789_RS08870 (IC789_08865) - 1862520..1863071 (+) 552 WP_004701984.1 type II secretion system protein -
  IC789_RS08875 (IC789_08870) xcpV 1863061..1863441 (+) 381 WP_019458993.1 type II secretion system minor pseudopilin GspI Machinery gene
  IC789_RS08880 (IC789_08875) xcpW 1863441..1864256 (+) 816 WP_077168510.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IC789_RS08885 (IC789_08880) gspK 1864256..1865212 (+) 957 WP_077168511.1 type II secretion system minor pseudopilin GspK -
  IC789_RS08890 (IC789_08885) - 1865442..1866038 (+) 597 WP_077168512.1 6-pyruvoyl trahydropterin synthase family protein -
  IC789_RS08895 (IC789_08890) ung 1866089..1866802 (+) 714 WP_077168513.1 uracil-DNA glycosylase -
  IC789_RS08900 (IC789_08895) - 1866799..1867923 (+) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  IC789_RS08905 (IC789_08900) tadA 1867931..1868433 (+) 503 Protein_1748 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.19 Da        Isoelectric Point: 9.4463

>NTDB_id=483403 IC789_RS08875 WP_019458993.1 1863061..1863441(+) (xcpV) [Acinetobacter seifertii strain AS60]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=483403 IC789_RS08875 WP_019458993.1 1863061..1863441(+) (xcpV) [Acinetobacter seifertii strain AS60]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGTACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

96.032

100

0.96