Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IC793_RS17640 Genome accession   NZ_CP061571
Coordinates   3625613..3627181 (+) Length   522 a.a.
NCBI ID   WP_307887509.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS70     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3620613..3632181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC793_RS17620 (IC793_17610) - 3621105..3622406 (+) 1302 WP_039254228.1 homoserine dehydrogenase -
  IC793_RS17625 (IC793_17615) thrC 3622461..3623600 (+) 1140 WP_019457006.1 threonine synthase -
  IC793_RS17630 (IC793_17620) pbpG 3623709..3624755 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC793_RS17635 (IC793_17625) - 3624967..3625602 (+) 636 WP_019457005.1 response regulator -
  IC793_RS17640 (IC793_17630) pilS 3625613..3627181 (+) 1569 WP_307887509.1 PAS domain-containing sensor histidine kinase Regulator
  IC793_RS17645 (IC793_17635) - 3627205..3628625 (+) 1421 Protein_3482 sigma-54-dependent transcriptional regulator -
  IC793_RS17650 (IC793_17640) - 3628629..3629813 (-) 1185 WP_039254236.1 S41 family peptidase -
  IC793_RS17655 (IC793_17645) gpmI 3629829..3631376 (-) 1548 WP_077164313.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59055.22 Da        Isoelectric Point: 6.3382

>NTDB_id=483298 IC793_RS17640 WP_307887509.1 3625613..3627181(+) (pilS) [Acinetobacter seifertii strain AS70]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQTDNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIANQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYNIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGELQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLQHMIGKQAKRIDSIVQDTLGLARSERTHPIQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVTINIHSQANKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=483298 IC793_RS17640 WP_307887509.1 3625613..3627181(+) (pilS) [Acinetobacter seifertii strain AS70]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAACTGACAATAGTTTGCAGCAACCATCTTTATATTTTT
ATACGCTACTAGGCTACTCAATTGTCAGTCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAAATCAGGCAACACGCCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTTTACTGACTTTTTCTGTTGGTGAACCAAATTTACAGCTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTAATCATTACCTTGCTTGCGA
TCATTGCAGTAATTTACCAACGCTTCGTGGGTAGTTTGTTCGACTACAACAATCTAAACACGATCGGGAATAGTGCCCTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGTATTGGTCAAATTGCGGTACAGCGCTTTAAATTACTTGAAGCTTTGACCTT
TCACCAGTCAGTTGAACTTTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACAATATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTCGGTATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGAATTACAAGAAGGTGACCGATTTAT
TTTTGAGTCCCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACACTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGACAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAACCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGACCCAGAACAACA
AAATACTTTGCAACATATGATTGGTAAACAAGCCAAACGCATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCATCCTATTCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCCGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTAATGATTAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTAATGTCACGATCAATATTCATTCACAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTCTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.146

100

0.921