Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IC793_RS16980 Genome accession   NZ_CP061571
Coordinates   3481556..3483784 (+) Length   742 a.a.
NCBI ID   WP_191102326.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS70     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3476556..3488784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC793_RS16955 (IC793_16950) - 3478092..3478430 (-) 339 WP_019456905.1 tRNA-binding protein -
  IC793_RS16960 (IC793_16955) - 3478663..3478923 (+) 261 WP_019456904.1 DUF2798 domain-containing protein -
  IC793_RS16965 (IC793_16960) - 3478983..3479327 (-) 345 WP_019456903.1 hypothetical protein -
  IC793_RS16970 (IC793_16965) gspG 3479593..3480177 (-) 585 WP_191102559.1 type II secretion system major pseudopilin GspG -
  IC793_RS16975 (IC793_16970) gspF 3480201..3481379 (-) 1179 WP_307887505.1 type II secretion system inner membrane protein GspF -
  IC793_RS16980 (IC793_16975) priA 3481556..3483784 (+) 2229 WP_191102326.1 primosomal protein N' Machinery gene
  IC793_RS16985 (IC793_16980) - 3483860..3485701 (+) 1842 WP_191102327.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IC793_RS16990 (IC793_16985) - 3485867..3486742 (+) 876 WP_004699009.1 Hsp33 family molecular chaperone HslO -
  IC793_RS16995 (IC793_16990) - 3486879..3487489 (+) 611 Protein_3359 LysE family translocator -
  IC793_RS17000 (IC793_16995) - 3487640..3488601 (+) 962 Protein_3360 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84003.84 Da        Isoelectric Point: 8.5625

>NTDB_id=483294 IC793_RS16980 WP_191102326.1 3481556..3483784(+) (priA) [Acinetobacter seifertii strain AS70]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPTPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKVVKKQHGISQPLIEQIKNTLTRKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=483294 IC793_RS16980 WP_191102326.1 3481556..3483784(+) (priA) [Acinetobacter seifertii strain AS70]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCACGCGTCGCGATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAACGGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATTTATGGAAAATCATTC
CTTGTGACAATGTTGAAGCCTTGTTAAAGCGTTCCATTAAGCAACAAGATGCGTATCAGATTTTAAAATTGCATCCTGCT
GGAACTACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCGTTACAAAAGAAGGGATTGGTTGA
CTGCACACTCGAACCACACGACTTTAGCCCAACACCTGTTCAATTGGCACAAATGCCGCTCACACTCAATGAAGACCAAA
AGAAAGCAACCCAGCACGTCGTAAACGCGCAACATCAATACCAAGCCTTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAGGTGCTAAAGCAAGGTAAACAAGTACTGGTGTTAGTCCCAGAAATTGGTTT
AACTCCTCAAACGATTTCTCGCTTTAAGTCTCGTTTTAACTGTGATATTGCTTTATTGCACTCTGGCTTAAATGACTCCA
AACGCCTACAAGCATGGCAACAGGCACAGACCGGAAAAGCATCTATTATTTTAGGAACGCGCTCTGCCATCTATACGCCA
CTGCCACGTTTGGGCCTCATCATTTTAGATGAAGAACACGACCTGTCTTATAAGCAACAAGAAGGCTTCCGTTATCATGC
GCGTGATGTCGCACTGTACCGCGGTCACTTGCAAAGCTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGCATCGACAGTT
ATCACTTGGTAGAAACTGGTAAGTTAACTTCACTGCAACTTAACCAACGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATAGATCTTAAAGTTGTCAAAAAGCAGCATGGTATTAGTCAGCCTTTAATCGAGCAGATTAAAAATACCCTAACAAG
AAAAGAACAGGTTTTAATTTTTTTAAATCGTCGTGGTTATGCACCTGTATTGGTTTGTGAAAGCTGTGGATGGCAAGCAA
ATTGTCCCCATTGCGATGCACATTTTACGTTACACACTCAGCCTTATTCTTATTTACATTGTCACCACTGCGGCACGGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCCGGAACAGCCAAAGTTGAAGA
GCACTTACAAGAACTCTTTCCAGACTATGATGTGATTCGTGTTGACCGTGACAGTACCAGTCGTGTCGGTAGTTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCCACAATTTTGCTTGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTACTGAGTGTCGATATTCGGGCGCCAGAACGTACTGCACA
GTTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGCCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCGGTTGCCAAACAAACATTAGCTGAACGGAAAGTTGCATTA
CTACCGCCTTATCGTTATGCGGTCTTAATTCGTGCCGAGTCGAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCTGAACAGCTTCGCCAAATTGCAGGTGATATTGTTGATATCTGGGGACCCATTCCAGCACCAATGGAACGTAAAGCTG
GACGTTACCGCGCCCATATGGTGATTTTATCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTCAGGCTCTCTATTGATGTTGATCCACAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.574

100

0.976