Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   IC793_RS16280 Genome accession   NZ_CP061571
Coordinates   3337846..3338646 (-) Length   266 a.a.
NCBI ID   WP_191102279.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS70     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3332846..3343646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC793_RS16260 (IC793_16255) - 3333911..3334609 (-) 699 WP_002053293.1 tetratricopeptide repeat protein -
  IC793_RS16265 (IC793_16260) hisS 3334638..3335930 (-) 1293 WP_039250413.1 histidine--tRNA ligase -
  IC793_RS16270 (IC793_16265) ispG 3335927..3337042 (-) 1116 WP_004698760.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  IC793_RS16275 (IC793_16270) - 3337064..3337855 (-) 792 WP_004698761.1 RodZ domain-containing protein -
  IC793_RS16280 (IC793_16275) pilF 3337846..3338646 (-) 801 WP_191102279.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  IC793_RS16285 (IC793_16280) rlmN 3338662..3339894 (-) 1233 WP_191102280.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  IC793_RS16290 (IC793_16285) ndk 3340017..3340448 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  IC793_RS16295 (IC793_16290) iscX 3340562..3340762 (-) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  IC793_RS16300 (IC793_16295) - 3340862..3341413 (-) 552 WP_134262245.1 phosphatase PAP2 family protein -
  IC793_RS16305 (IC793_16300) - 3341438..3342736 (-) 1299 WP_191102556.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30153.51 Da        Isoelectric Point: 9.2354

>NTDB_id=483290 IC793_RS16280 WP_191102279.1 3337846..3338646(-) (pilF) [Acinetobacter seifertii strain AS70]
MSTPKLKIMLCMGVAVAFLASGCQTSPTLKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSIESRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQRNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=483290 IC793_RS16280 WP_191102279.1 3337846..3338646(-) (pilF) [Acinetobacter seifertii strain AS70]
TTGAGTACTCCGAAGTTAAAGATCATGTTATGTATGGGGGTTGCAGTTGCATTTCTGGCAAGTGGTTGTCAGACGTCGCC
AACACTAAAAAAGGACCCGGAAAAAGCAGTTAAGGTGCGTACGCAGCTTGCTGCAGAATACATTCGTTCTGGTGACTTGG
ACTCAGCAAAACGTTCCCTCGATCAAGCTCTAAGTATCGAGAGTCGTGACGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCAGAACATTATTTTAAACGTGCAATTTCTTCTGAGCCAGATAA
TGCTCAGGCGCGTAATAATTATGGTACGTATTTGTACCAGATGGAACGTTATAATGATGCCGTCGAGCAGTTCCGTATTG
CTGGTGCAACATTAGGTTATGACCAACGTTACCAAGCCTTAGAAAATCTGGGGCGGATTTATTTAAAATTAGGTGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCGCTCCTTGCTAACCGTGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAGAAATCAGG
GTGCTCGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(149-206)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

97.368

100

0.974
  pilF Acinetobacter baylyi ADP1

73.846

97.744

0.722