Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   IC794_RS17590 Genome accession   NZ_CP061568
Coordinates   3637056..3637856 (-) Length   266 a.a.
NCBI ID   WP_190977850.1    Uniprot ID   A0A7H2QYU4
Organism   Acinetobacter seifertii strain AS71     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3632056..3642856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC794_RS17570 (IC794_17570) - 3633120..3633819 (-) 700 Protein_3465 YfgM family protein -
  IC794_RS17575 (IC794_17575) hisS 3633848..3635140 (-) 1293 WP_077169052.1 histidine--tRNA ligase -
  IC794_RS17580 (IC794_17580) ispG 3635137..3636252 (-) 1116 WP_004698760.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  IC794_RS17585 (IC794_17585) - 3636274..3637065 (-) 792 WP_077169053.1 RodZ domain-containing protein -
  IC794_RS17590 (IC794_17590) pilF 3637056..3637856 (-) 801 WP_190977850.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  IC794_RS17595 (IC794_17595) rlmN 3637872..3639104 (-) 1233 WP_004698763.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  IC794_RS17600 (IC794_17600) ndk 3639227..3639658 (-) 432 WP_190981868.1 nucleoside-diphosphate kinase -
  IC794_RS17605 (IC794_17605) iscX 3639772..3639972 (-) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  IC794_RS17610 (IC794_17610) - 3640072..3640623 (-) 552 WP_019458079.1 phosphatase PAP2 family protein -
  IC794_RS17615 (IC794_17615) - 3640648..3641946 (-) 1299 WP_077169054.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30109.44 Da        Isoelectric Point: 9.3755

>NTDB_id=483252 IC794_RS17590 WP_190977850.1 3637056..3637856(-) (pilF) [Acinetobacter seifertii strain AS71]
MSTPKLKIMLSMGVAVAFLASGCQTSPTLKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSIESRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=483252 IC794_RS17590 WP_190977850.1 3637056..3637856(-) (pilF) [Acinetobacter seifertii strain AS71]
TTGAGTACTCCGAAGTTAAAGATCATGTTATCTATGGGGGTTGCAGTTGCATTTCTGGCAAGTGGTTGTCAGACGTCGCC
AACACTAAAAAAGGACCCGGAAAAAGCAGTTAAGGTGCGTACGCAGCTTGCTGCAGAATACATTCGTTCTGGTGACTTGG
ACTCAGCAAAACGTTCCCTCGACCAAGCTCTAAGTATCGAGAGTCGTGACGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCAGAACATTATTTTAAACGTGCAATTTCTTCTGAGCCAGATAA
TGCTCAGGCGCGTAATAATTATGGTACGTATTTGTATCAAATGGAACGTTATAATGATGCTGTCGAGCAGTTCCGTATTG
CTGGTGCAACATTAGGTTATGACCAACGTTACCAAGCCTTAGAAAATCTGGGGCGGATTTATTTAAAATTAGGTGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCGCTCCTTGCTAACCGTGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCTCGTGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAATCAA
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2QYU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

97.368

100

0.974
  pilF Acinetobacter baylyi ADP1

73.585

99.624

0.733