Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IC796_RS17965 Genome accession   NZ_CP061561
Coordinates   3684767..3685093 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter seifertii strain AS73     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3679767..3690093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC796_RS17945 (IC796_17935) - 3679873..3680499 (-) 627 WP_077165227.1 FHA domain-containing protein -
  IC796_RS17950 (IC796_17940) gspD 3680540..3682816 (-) 2277 WP_151684859.1 type II secretion system secretin GspD -
  IC796_RS17955 (IC796_17945) - 3682858..3683694 (-) 837 WP_077169904.1 type II secretion system protein N -
  IC796_RS17960 (IC796_17950) gspN 3683694..3684437 (-) 744 WP_004699190.1 type II secretion system protein N -
  IC796_RS17965 (IC796_17955) hns 3684767..3685093 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  IC796_RS17970 (IC796_17960) - 3685287..3685727 (-) 441 WP_004699193.1 acyl-CoA thioesterase -
  IC796_RS17975 (IC796_17965) - 3685735..3686928 (-) 1194 WP_191036712.1 heme biosynthesis protein HemY -
  IC796_RS17980 (IC796_17970) - 3686938..3687777 (-) 840 WP_151684861.1 hypothetical protein -
  IC796_RS17985 (IC796_17975) - 3687786..3688553 (-) 768 WP_151684863.1 uroporphyrinogen-III synthase -
  IC796_RS17990 (IC796_17980) hemC 3688558..3689475 (-) 918 WP_191036713.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=483220 IC796_RS17965 WP_002053185.1 3684767..3685093(-) (hns) [Acinetobacter seifertii strain AS73]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=483220 IC796_RS17965 WP_002053185.1 3684767..3685093(-) (hns) [Acinetobacter seifertii strain AS73]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991