Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IC796_RS02545 Genome accession   NZ_CP061561
Coordinates   517242..518126 (+) Length   294 a.a.
NCBI ID   WP_077163570.1    Uniprot ID   A0A7H2PSM8
Organism   Acinetobacter seifertii strain AS73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512242..523126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC796_RS02520 (IC796_02520) - 512637..513884 (-) 1248 WP_004705421.1 YihY family inner membrane protein -
  IC796_RS02525 (IC796_02525) wrbA 514172..514765 (+) 594 WP_191017655.1 NAD(P)H:quinone oxidoreductase -
  IC796_RS02530 (IC796_02530) - 514820..515395 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  IC796_RS02535 (IC796_02535) - 515467..516180 (-) 714 WP_151683667.1 DUF3108 domain-containing protein -
  IC796_RS02540 (IC796_02540) - 516338..517009 (-) 672 WP_004705429.1 hypothetical protein -
  IC796_RS02545 (IC796_02545) tonB2 517242..518126 (+) 885 WP_077163570.1 energy transducer TonB Machinery gene
  IC796_RS02550 (IC796_02550) ybeY 518214..518693 (-) 480 WP_004705432.1 rRNA maturation RNase YbeY -
  IC796_RS02555 (IC796_02555) - 518970..520058 (-) 1089 WP_004705435.1 PhoH family protein -
  IC796_RS02560 (IC796_02560) miaB 520096..521547 (-) 1452 WP_151683665.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33558.35 Da        Isoelectric Point: 7.5649

>NTDB_id=483199 IC796_RS02545 WP_077163570.1 517242..518126(+) (tonB2) [Acinetobacter seifertii strain AS73]
MLKKRSLPIEPFLYWWQDRVFIVAIILAILLHTLVLLIHFAMPAPSEQSTKEIAISIRPAEDAVKHADFLAQADQQGSGT
FREAHRMSSNSPTPMTTDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLESQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSVLDEAAKASVRRGAPFGHFDSNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=483199 IC796_RS02545 WP_077163570.1 517242..518126(+) (tonB2) [Acinetobacter seifertii strain AS73]
ATGTTGAAAAAAAGAAGTCTTCCTATAGAGCCTTTTCTTTATTGGTGGCAAGACCGAGTCTTTATCGTTGCAATAATACT
CGCAATCTTGTTGCATACTCTTGTGCTGCTTATTCATTTTGCTATGCCTGCGCCGTCAGAGCAATCCACAAAAGAAATCG
CTATATCTATTCGTCCTGCTGAGGATGCTGTTAAGCATGCAGATTTTTTAGCGCAAGCAGACCAACAAGGTTCAGGAACT
TTTCGAGAGGCTCATCGGATGTCTAGTAATTCTCCGACGCCTATGACTACTGATGCTTCGACGGGAGAAGCCCAGTTAGA
AACTTTAGAAAAAGTACAGCAACAAAGAGAACTTAAGTTTGAAGAAAAAGTACTCATGACTGTGTTGAGCTGGCAGAAAC
AAGCTGAGGAGAGTCAAAGAAAGAAAGCACTTGAGCAATTAGAAAGCCAGTTTCAAGCTAAAGCTGCAATGGTCGCGAGC
CTAGAAGCTCAATATTTACAACGTCAGCAAGATTTCAGTCGTCAACAAAAAATAAAAACAGTCGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATTTAGATAAGTTCCGTGAAAAGGTGGAGCTTTACGGTAATCGTTATTATCCAGAAGAAG
CTAAACAACAACAATTAAAAGGTGAAGTTCGCCTTATGGTGATTTTGAATGCTCAAGGGGGCATTCGTGCAATTCGTTTA
CTTGAAAGTTCAGGACATTCAGTTTTAGATGAAGCTGCAAAAGCTTCTGTACGTCGTGGTGCACCATTTGGTCATTTTGA
TAGCAATATGAAAGATATTTCTGAACTACGTATTATTCGTACTTGGCGTTTTGATCCAGCTGAAGCTGAATTTGAGGTAC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PSM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.558

100

0.946