Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IC796_RS01785 Genome accession   NZ_CP061561
Coordinates   376994..377467 (+) Length   157 a.a.
NCBI ID   WP_151682770.1    Uniprot ID   A0A7H2PS93
Organism   Acinetobacter seifertii strain AS73     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371994..382467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC796_RS01760 (IC796_01760) - 372459..374564 (-) 2106 WP_004705224.1 RelA/SpoT family protein -
  IC796_RS01765 (IC796_01765) - 374604..374734 (-) 131 Protein_342 hypothetical protein -
  IC796_RS01770 (IC796_01770) rpoZ 374773..375051 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IC796_RS01775 (IC796_01775) gmk 375124..375753 (-) 630 WP_004705226.1 guanylate kinase -
  IC796_RS01780 (IC796_01780) ispH 375876..376826 (+) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC796_RS01785 (IC796_01785) fimU 376994..377467 (+) 474 WP_151682770.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC796_RS01790 (IC796_01790) pilV 377467..377970 (+) 504 WP_151682769.1 type IV pilus modification protein PilV -
  IC796_RS01795 (IC796_01795) - 377970..378944 (+) 975 WP_151682768.1 PilW family protein -
  IC796_RS01800 (IC796_01800) - 378947..379711 (+) 765 WP_151682767.1 pilus assembly protein PilX -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17134.73 Da        Isoelectric Point: 6.7065

>NTDB_id=483196 IC796_RS01785 WP_151682770.1 376994..377467(+) (fimU) [Acinetobacter seifertii strain AS73]
MRGIIPQEGFTLIELMVTIAVMAVIAVMAVPSMSNILEAKHFDDNQNNLMQTFNLARSQAVLNRTNVSVNLNSNAANTST
NFNWIADQHNSLELRLLAADGTTTLLSMQNITFIANGTVSGISQDLLVSMCNSQLHIKKSFVLSKLGSTFMNPKESC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=483196 IC796_RS01785 WP_151682770.1 376994..377467(+) (fimU) [Acinetobacter seifertii strain AS73]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTAATTGAGCTCATGGTAACCATCGCAGTGATGGCAGTTATTGCTGT
GATGGCTGTGCCGTCTATGTCAAATATACTGGAAGCAAAGCATTTTGATGATAATCAAAATAACTTGATGCAAACGTTTA
ATCTGGCAAGAAGCCAAGCTGTACTAAATCGTACAAATGTTTCTGTAAATTTAAACTCAAATGCTGCTAATACCTCAACA
AATTTTAACTGGATTGCAGACCAGCATAATAGTCTTGAGTTAAGACTTTTGGCAGCAGATGGAACAACAACTCTTCTATC
GATGCAAAATATCACATTTATAGCAAATGGAACCGTTTCTGGTATTTCTCAAGATTTGCTTGTTTCTATGTGTAATTCTC
AACTACATATTAAGAAAAGTTTTGTTTTATCAAAATTGGGTTCTACCTTCATGAATCCAAAGGAAAGTTGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2PS93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

57.325

100

0.573