Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IC797_RS17190 Genome accession   NZ_CP061556
Coordinates   3625274..3626842 (+) Length   522 a.a.
NCBI ID   WP_223851887.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS74     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3620274..3631842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC797_RS17170 (IC797_17170) - 3620767..3622068 (+) 1302 WP_025465069.1 homoserine dehydrogenase -
  IC797_RS17175 (IC797_17175) thrC 3622123..3623262 (+) 1140 WP_019457006.1 threonine synthase -
  IC797_RS17180 (IC797_17180) pbpG 3623370..3624416 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC797_RS17185 (IC797_17185) - 3624628..3625263 (+) 636 WP_019457005.1 response regulator -
  IC797_RS17190 (IC797_17190) pilS 3625274..3626842 (+) 1569 WP_223851887.1 PAS domain-containing sensor histidine kinase Regulator
  IC797_RS17195 (IC797_17195) - 3626867..3628287 (+) 1421 Protein_3375 sigma-54-dependent transcriptional regulator -
  IC797_RS17200 (IC797_17200) - 3628291..3629474 (-) 1184 Protein_3376 S41 family peptidase -
  IC797_RS17205 (IC797_17205) gpmI 3629490..3631037 (-) 1548 WP_107973115.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59008.16 Da        Isoelectric Point: 6.2956

>NTDB_id=483184 IC797_RS17190 WP_223851887.1 3625274..3626842(+) (pilS) [Acinetobacter seifertii strain AS74]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQTDNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIAAHATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYNIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGDLQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLQHMIGKQAKRIDSIVQDTLGLARSERTHPIQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPDVTINIHSQANKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=483184 IC797_RS17190 WP_223851887.1 3625274..3626842(+) (pilS) [Acinetobacter seifertii strain AS74]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAACTGACAATAGTTTGCAGCAACCCTCTTTATATTTTT
ACACCCTACTAGGCTACTCAATTGTCAGCCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAGCTCATGCAACACGGCAG
CTTGCTTTATTTTTTATTGTCGACGTTATTTGTTTGAGTTTACTGACTTTCTCTGTTGGTGAACCAAATTTACAGCTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTGCTCAGCGCAAGAATGTCTTTAATCATTACCTTGCTTGCGA
TCATTGCAGTTATTTACCAACGCTTCGTGGGTAGTTTGTTCGACTACAACAATCTAAACACGATCGGGAATAGTGCCCTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGGATTGGTCAAATTGCGGTTCAGCGCTTTAAATTACTTGAAGCTTTGACCTT
TCACCAGTCGGTGGAGCTCTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACAATATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTCGGGATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGACTTACAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACTCTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGACAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAACCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGACCCAGAACAACA
AAATACTTTGCAACATATGATTGGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCATCCTATTCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCCGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTTATGATTAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTGATGTCACGATCAATATTCATTCACAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTCTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-271)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.146

100

0.921