Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IC798_RS16620 Genome accession   NZ_CP061551
Coordinates   3512144..3514372 (+) Length   742 a.a.
NCBI ID   WP_191107077.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS78     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3507144..3519372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC798_RS16595 (IC798_16595) - 3508679..3509017 (-) 339 WP_000434938.1 tRNA-binding protein -
  IC798_RS16600 (IC798_16600) - 3509251..3509511 (+) 261 WP_019456904.1 DUF2798 domain-containing protein -
  IC798_RS16605 (IC798_16605) - 3509572..3509916 (-) 345 WP_019456903.1 hypothetical protein -
  IC798_RS16610 (IC798_16610) gspG 3510182..3510766 (-) 585 WP_039251176.1 type II secretion system major pseudopilin GspG -
  IC798_RS16615 (IC798_16615) gspF 3510790..3511995 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  IC798_RS16620 (IC798_16620) priA 3512144..3514372 (+) 2229 WP_191107077.1 primosomal protein N' Machinery gene
  IC798_RS16625 (IC798_16625) - 3514448..3516289 (+) 1842 WP_191107078.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IC798_RS16630 (IC798_16630) - 3516455..3517330 (+) 876 WP_191107079.1 Hsp33 family molecular chaperone HslO -
  IC798_RS16635 (IC798_16635) - 3517467..3518078 (+) 612 WP_004699012.1 LysE family translocator -
  IC798_RS16640 (IC798_16640) - 3518229..3519191 (+) 963 WP_191107080.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83935.80 Da        Isoelectric Point: 8.5616

>NTDB_id=483136 IC798_RS16620 WP_191107077.1 3512144..3514372(+) (priA) [Acinetobacter seifertii strain AS78]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPTPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQSCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKVVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGLHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=483136 IC798_RS16620 WP_191107077.1 3512144..3514372(+) (priA) [Acinetobacter seifertii strain AS78]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCACGCGTCGCGATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCTGCCCAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAACGGCCCTACCCGCATTATTGCGTCAGGGCAAACCGATGGATGTATTGTTTCATCTATGGAAAATCATTC
CTTGTGACAATGTTGAAGCACTTCTTAAACGTTCTGTTAAGCAACAAGATGCGTATCAAATTTTAAAATTACACCCTGCT
GGAACTACAGAAAATATTCTCAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAGGGATTGGTTGA
CTGCACACTCGAACCACACGACTTTAGCCCAACACCTGTGCAATTGGCACAAATGCCGCTCACACTCAATGAAGACCAAA
AGAAAGCAACCCAACACGTCGTAAACGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCATGAGGTGTTAAAACAAGGTAAGCAAGTCCTAGTATTGGTTCCTGAAATTGGCTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATTGCTTTATTGCATTCAGGCTTAAATGACTCGA
AACGCCTACAAGCATGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGAACTCGCTCAGCCATTTATACACCG
CTGCCACGTCTGGGCCTCATTATTTTAGATGAAGAACATGACCTGTCTTATAAGCAACAAGAAGGTTTCCGTTATCATGC
TCGTGATGTCGCACTGTACCGAGGCCACTTACAAAGCTGCCCTGTTATTTTAGGTTCGGCCACTCCAAGCATCGACAGCT
ATCACTTAGTAGAAACTGGTAAGTTAACTTCACTGCAACTGAACCAGCGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATAGATCTTAAAGTTGTCAAAAAGCAGCATGGTATTAGCCAGCCTTTAATCGAGCAAATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGTTATGCACCTGTATTGGTTTGTGAAAGCTGTGGATGGCAAGCAA
ATTGTCCCCATTGCGATGCACATTTTACGTTGCATACTCAGCCTTATTCTTATTTGCATTGTCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCTGGAACAGCCAAAGTTGAAGA
GCACTTACAAGAGTTATTCCCAGATTATGATGTGATTCGAGTCGATCGTGACAGCACCAGTCGTGTCGGTAGTTGGCAAA
AAATTTATGATCGTATTCATCAAAACAAACCCACAATTTTGCTCGGTACTCAAATGTTGGCAAAGGGTCTCCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCGGGTTTACTGAGTGTCGATATTCGGGCGCCAGAGCGTACGGCGCA
GTTGATTGTACAAGTGGCTGGTCGCGCAGGTCGTGGAGAGCACAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCGGTTGCGAAACAAACATTAGCTGAACGTAAAGTTGCTTTA
CTGCCACCTTATCGTTATGCGGTCTTAATTCGTGCTGAATCGAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAACAGCTTCGCCAAATTGCAGGTGATATTGTTGATATTTGGGGGCCGATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTAGTTCATGCACCAAGACAGCATCAACTCAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Helicase conserved C-terminal domain (Helicase_C)

(533-599)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.574

100

0.976