Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   IC798_RS02395 Genome accession   NZ_CP061551
Coordinates   494383..495243 (+) Length   286 a.a.
NCBI ID   WP_191101749.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 489383..500243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC798_RS02370 (IC798_02370) - 489756..491003 (-) 1248 WP_004705421.1 YihY family inner membrane protein -
  IC798_RS02375 (IC798_02375) wrbA 491291..491884 (+) 594 WP_191107986.1 NAD(P)H:quinone oxidoreductase -
  IC798_RS02380 (IC798_02380) - 491938..492513 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  IC798_RS02385 (IC798_02385) - 492585..493298 (-) 714 WP_191016488.1 DUF3108 domain-containing protein -
  IC798_RS02390 (IC798_02390) - 493456..494127 (-) 672 WP_004705429.1 hypothetical protein -
  IC798_RS02395 (IC798_02395) tonB2 494383..495243 (+) 861 WP_191101749.1 energy transducer TonB Machinery gene
  IC798_RS02400 (IC798_02400) ybeY 495331..495810 (-) 480 WP_004705432.1 rRNA maturation RNase YbeY -
  IC798_RS02405 (IC798_02405) - 496087..497175 (-) 1089 WP_004705435.1 PhoH family protein -
  IC798_RS02410 (IC798_02410) miaB 497213..498664 (-) 1452 WP_068935662.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32641.19 Da        Isoelectric Point: 6.7729

>NTDB_id=483119 IC798_RS02395 WP_191101749.1 494383..495243(+) (tonB2) [Acinetobacter seifertii strain AS78]
MEPFLYWWQDRVFIVAIILAILLHTLVLLIHFAMPAPSEQSTKEIAISIRPAEDAVKHADFLAQADQQGSGTFREAHRMS
SNSPTPMTTDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLESQFQAKAAMVASLEAQYLQR
QQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRLLESSGHSV
LDEAAKASVRRGAPFGRFDSNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 861 bp        

>NTDB_id=483119 IC798_RS02395 WP_191101749.1 494383..495243(+) (tonB2) [Acinetobacter seifertii strain AS78]
ATAGAGCCTTTTCTTTATTGGTGGCAAGACCGAGTCTTTATTGTTGCAATAATACTCGCAATCTTGTTGCATACTCTTGT
GCTGCTTATTCATTTTGCTATGCCTGCGCCGTCAGAGCAATCCACGAAAGAAATCGCTATATCTATTCGTCCTGCTGAGG
ATGCTGTTAAGCATGCAGATTTTTTAGCGCAAGCAGACCAACAAGGTTCAGGAACTTTTCGAGAGGCTCATCGGATGTCT
AGTAATTCTCCGACGCCTATGACTACTGATGCTTCAACGGGAGAAGCCCAGTTAGAAACTTTAGAAAAAGTACAGCAACA
AAGAGAACTTAAGTTTGAAGAAAAAGTACTCATGACTGTGTTGAGTTGGCAGAAACAAGCTGAGGAGAGTCAAAGAAAGA
AAGCACTTGAACAATTAGAAAGCCAGTTTCAAGCTAAAGCTGCAATGGTCGCGAGCCTAGAAGCTCAATATTTACAACGT
CAGCAAGATTTCAGTCGTCAACAAAAAATAAAAACAGTCGATGGTATTCAAGCCAAGAAAGATGCTTCAGCAGCTTATTT
AGATAAGTTCCGTGAAAAGGTGGAGCTTTACGGTAACCGTTATTATCCAGAAGAAGCTAAACAACAACAATTAAAAGGTG
AAGTTCGCCTTATGGTGATTTTGAATGCTCAAGGGGGCATTCGTGCAATTCGTTTACTTGAAAGTTCAGGACATTCAGTT
TTAGATGAAGCTGCAAAAGCTTCTGTACGTCGTGGTGCGCCATTTGGTCGTTTTGATAGCAATATGAAAGATATTTCTGA
GCTACGTATCATTCGTACTTGGCGTTTTGATCCAGCTGAAGCTGAATTTGAGGTACATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(199-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

94.755

100

0.948