Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IC799_RS16855 Genome accession   NZ_CP061550
Coordinates   3642710..3644278 (+) Length   522 a.a.
NCBI ID   WP_223851887.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS79     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3637710..3649278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS16835 (IC799_16830) - 3638203..3639504 (+) 1302 WP_025465069.1 homoserine dehydrogenase -
  IC799_RS16840 (IC799_16835) thrC 3639559..3640698 (+) 1140 WP_019457006.1 threonine synthase -
  IC799_RS16845 (IC799_16840) pbpG 3640806..3641852 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC799_RS16850 (IC799_16845) - 3642064..3642699 (+) 636 WP_019457005.1 response regulator -
  IC799_RS16855 (IC799_16850) pilS 3642710..3644278 (+) 1569 WP_223851887.1 sensor histidine kinase Regulator
  IC799_RS16860 (IC799_16855) pilR 3644303..3645724 (+) 1422 WP_004699259.1 sigma-54-dependent transcriptional regulator Regulator
  IC799_RS16865 (IC799_16860) - 3645728..3646912 (-) 1185 WP_151684879.1 S41 family peptidase -
  IC799_RS16870 (IC799_16865) gpmI 3646928..3648475 (-) 1548 WP_191012481.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59008.16 Da        Isoelectric Point: 6.2956

>NTDB_id=483103 IC799_RS16855 WP_223851887.1 3642710..3644278(+) (pilS) [Acinetobacter seifertii strain AS79]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQTDNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIAAHATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYNIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGDLQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLQHMIGKQAKRIDSIVQDTLGLARSERTHPIQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPDVTINIHSQANKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=483103 IC799_RS16855 WP_223851887.1 3642710..3644278(+) (pilS) [Acinetobacter seifertii strain AS79]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAACTGACAATAGTTTGCAGCAACCCTCTTTATATTTTT
ACACCCTACTAGGCTACTCAATTGTCAGCCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAGCTCATGCAACACGGCAG
CTTGCTTTATTTTTTATTGTCGACGTTATTTGTTTGAGTTTACTGACTTTCTCTGTTGGTGAACCAAATTTACAGCTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTGCTCAGCGCAAGAATGTCTTTAATCATTACCTTGCTTGCGA
TCATTGCAGTTATTTACCAACGCTTCGTGGGTAGTTTGTTCGACTACAACAATCTAAACACGATCGGGAATAGTGCCCTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGGATTGGTCAAATTGCGGTTCAGCGCTTTAAATTACTTGAAGCTTTGACCTT
TCACCAGTCGGTGGAGCTCTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACAATATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTCGGGATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGACTTACAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACTCTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGACAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAACCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGACCCAGAACAACA
AAATACTTTGCAACATATGATTGGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCATCCTATTCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCCGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTTATGATTAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTGATGTCACGATCAATATTCATTCACAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTCTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-271)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.146

100

0.921