Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IC799_RS16205 Genome accession   NZ_CP061550
Coordinates   3500279..3502507 (+) Length   742 a.a.
NCBI ID   WP_191028689.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS79     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3495279..3507507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS16180 (IC799_16175) - 3496817..3497155 (-) 339 WP_191028687.1 tRNA-binding protein -
  IC799_RS16185 (IC799_16180) - 3497387..3497647 (+) 261 WP_191028688.1 DUF2798 domain-containing protein -
  IC799_RS16190 (IC799_16185) - 3497707..3498051 (-) 345 WP_019456903.1 hypothetical protein -
  IC799_RS16195 (IC799_16190) gspG 3498317..3498901 (-) 585 WP_004699000.1 type II secretion system major pseudopilin GspG -
  IC799_RS16200 (IC799_16195) gspF 3498925..3500130 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  IC799_RS16205 (IC799_16200) priA 3500279..3502507 (+) 2229 WP_191028689.1 primosomal protein N' Machinery gene
  IC799_RS16210 (IC799_16205) - 3502583..3504424 (+) 1842 WP_191028690.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IC799_RS16215 (IC799_16210) - 3504590..3505465 (+) 876 WP_004699009.1 Hsp33 family molecular chaperone HslO -
  IC799_RS16220 (IC799_16215) - 3505602..3506213 (+) 612 WP_004699012.1 LysE family translocator -
  IC799_RS16225 (IC799_16220) - 3506364..3507326 (+) 963 WP_191012515.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83995.91 Da        Isoelectric Point: 8.6615

>NTDB_id=483098 IC799_RS16205 WP_191028689.1 3500279..3502507(+) (priA) [Acinetobacter seifertii strain AS79]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIIAEKVDPKESFTGNFQLKAISELL
DDEPILDEQVLSLLTWTAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=483098 IC799_RS16205 WP_191028689.1 3500279..3502507(+) (priA) [Acinetobacter seifertii strain AS79]
ATGACCATAACGCCAAAACCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAGGTAGGTTCACGCGTCGCGATTTCATTTGGACGGCAAAACCTAA
TTGGTATCATTGCTGAAAAAGTTGACCCAAAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAACCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGACTGCCCAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAACAGCCCTACCCGCGTTATTGCGTCAGGGTAAACCAATGGATGTATTGTTTCATCTATGGAAAATCATTC
CTTGTGACAATGTTGAAGCCTTGTTAAAGCGTTCCATTAAGCAACAAGATGCGTATCAGATTTTAAAATTACATCCTGCC
GGAACTACAGAAAATATTCTTAATTTAAGTGGTGTAGAAACTGCGACACTTAAAGCACTTCAAAAGAAAGGACTGATAGA
CTGTACACTTGAGCCTCATGATTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCACTTACCCTAAATGATGATCAAA
AGAAGGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGTTAAAACAAGGTAAGCAAGTCCTAGTATTGGTTCCTGAAATTGGCTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATTGCTTTATTGCATTCAGGCTTAAATGACTCTA
AACGCTTACAAGCATGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGGACTCGTTCCGCCATTTATACGCCG
CTGCCACGTCTGGGCCTCATCATTTTAGATGAAGAACACGACCTGTCTTATAAGCAGCAAGAAGGCTTCCGTTATCATGC
GCGTGATGTCGCACTGTACCGAGGCCACTTACAAAACTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGCATCGACAGTT
ATCACTTGGTAGAAACTGGTAAGTTAACTTCACTGCAACTTAACCAACGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAGCATGGTATTAGTCAGCCTTTAATCGAGCAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAATCGTCGTGGCTATGCGCCTGTACTTGTGTGTGAAAGCTGTGGATGGCAAGCGA
ATTGTCCACATTGCGATGCGCATTTTACGTTACACACTCAGCCTTATTCTTATTTGCATTGTCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCCGGAACAGCTAAGGTTGAAGA
GCACTTACAAGAACTATTCCCAGACTATGATGTGATTCGAGTCGATCGTGACAGCACCAGTCGTGTCGGTAGTTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCCACAATTTTGCTTGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCGGGTTTACTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCACA
GTTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCAGTCGCAAAACAAACTCTGGCTGAGCGTAAAGTTGCATTA
CTGCCGCCTTATCGTTATGCAGTCTTAATTCGTGCTGAGTCGAAAGATCGAGACTATACCTTACATTTTTTAAATGAAGC
TGCCGAACAGCTTCGCCAAATTGCAGGTGATATTGTTGATATTTGGGGGCCGATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTTAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.035

100

0.97