Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IC799_RS09935 Genome accession   NZ_CP061550
Coordinates   2142678..2143058 (-) Length   126 a.a.
NCBI ID   WP_019458993.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS79     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2137678..2148058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS09905 (IC799_09905) tadA 2137682..2138185 (-) 504 WP_191028371.1 tRNA adenosine(34) deaminase TadA -
  IC799_RS09910 (IC799_09910) - 2138193..2139317 (-) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  IC799_RS09915 (IC799_09915) ung 2139314..2140027 (-) 714 WP_191013121.1 uracil-DNA glycosylase -
  IC799_RS09920 (IC799_09920) - 2140078..2140674 (-) 597 WP_039251397.1 6-pyruvoyl trahydropterin synthase family protein -
  IC799_RS09925 (IC799_09925) gspK 2140904..2141863 (-) 960 WP_191013120.1 type II secretion system minor pseudopilin GspK -
  IC799_RS09930 (IC799_09930) xcpW 2141863..2142678 (-) 816 WP_191013119.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IC799_RS09935 (IC799_09935) xcpV 2142678..2143058 (-) 381 WP_019458993.1 type II secretion system minor pseudopilin GspI Machinery gene
  IC799_RS09940 (IC799_09940) - 2143048..2143599 (-) 552 WP_191013118.1 type II secretion system protein -
  IC799_RS09945 (IC799_09945) - 2143609..2144217 (-) 609 WP_191013259.1 TetR/AcrR family transcriptional regulator -
  IC799_RS09950 (IC799_09950) - 2144255..2145028 (-) 774 WP_077168509.1 TatD family hydrolase -
  IC799_RS09955 (IC799_09955) - 2145046..2145387 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  IC799_RS09960 (IC799_09960) - 2145400..2146380 (-) 981 WP_191013117.1 DNA polymerase III subunit delta' -
  IC799_RS09965 (IC799_09965) kdsB 2146392..2147153 (-) 762 WP_191013116.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.19 Da        Isoelectric Point: 9.4463

>NTDB_id=483086 IC799_RS09935 WP_019458993.1 2142678..2143058(-) (xcpV) [Acinetobacter seifertii strain AS79]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=483086 IC799_RS09935 WP_019458993.1 2142678..2143058(-) (xcpV) [Acinetobacter seifertii strain AS79]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCCTTGGCAATCTTTGCTGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACTCAGTCTACCTCTAATGCGATTTTACGAACCAAAGCTCAATTTGTGGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAGGGCACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTCAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

96.032

100

0.96