Detailed information NTG0483085

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: IC799_RS09930
• Genome accession: NZ_CP061550
• Coordinates: 2141863..2142678 (-)
• Length: 271 a.a.
• NCBI ID: WP_191013119.1
• Uniprot ID: A0A7H2VBV6
• Organism: Acinetobacter seifertii strain AS79
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2136863..2147678

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IC799_RS09900 (IC799_09900)	-	2137172..2137612 (-)	441	WP_107973453.1	SRPBCC family protein	-
IC799_RS09905 (IC799_09905)	tadA	2137682..2138185 (-)	504	WP_191028371.1	tRNA adenosine(34) deaminase TadA	-
IC799_RS09910 (IC799_09910)	-	2138193..2139317 (-)	1125	WP_019458997.1	enoyl-CoA hydratase/isomerase family protein	-
IC799_RS09915 (IC799_09915)	ung	2139314..2140027 (-)	714	WP_191013121.1	uracil-DNA glycosylase	-
IC799_RS09920 (IC799_09920)	-	2140078..2140674 (-)	597	WP_039251397.1	6-pyruvoyl trahydropterin synthase family protein	-
IC799_RS09925 (IC799_09925)	gspK	2140904..2141863 (-)	960	WP_191013120.1	type II secretion system minor pseudopilin GspK	-
IC799_RS09930 (IC799_09930)	xcpW	2141863..2142678 (-)	816	WP_191013119.1	type II secretion system minor pseudopilin GspJ	Machinery gene
IC799_RS09935 (IC799_09935)	xcpV	2142678..2143058 (-)	381	WP_019458993.1	type II secretion system minor pseudopilin GspI	Machinery gene
IC799_RS09940 (IC799_09940)	-	2143048..2143599 (-)	552	WP_191013118.1	type II secretion system protein	-
IC799_RS09945 (IC799_09945)	-	2143609..2144217 (-)	609	WP_191013259.1	TetR/AcrR family transcriptional regulator	-
IC799_RS09950 (IC799_09950)	-	2144255..2145028 (-)	774	WP_077168509.1	TatD family hydrolase	-
IC799_RS09955 (IC799_09955)	-	2145046..2145387 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
IC799_RS09960 (IC799_09960)	-	2145400..2146380 (-)	981	WP_191013117.1	DNA polymerase III subunit delta'	-
IC799_RS09965 (IC799_09965)	kdsB	2146392..2147153 (-)	762	WP_191013116.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 271 a.a.
• Molecular weight: 30667.94 Da
• Isoelectric Point: 9.7403

>NTDB_id=483085 IC799_RS09930 WP_191013119.1 2141863..2142678(-) (xcpW) [Acinetobacter seifertii strain AS79]
MIKNKYFCNRSKVSRLTARSGIVSTDYSEHSSSSYAQTKRCFSDSHTRKTVSHLAARSSSARLARASGFTLVELLVAIAI
FAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLK
QGLSPFERIEYRYDADQKKLYRLKYTNLNTSNNEQPLSSTLLSQVDQYQVMVLTPQEVTKWPEVNIDPTKPNDLKKLPKG
IKIQITVAGVSYEWIYSLNQSNLALSQQGGS

Nucleotide

• Length: 816 bp

>NTDB_id=483085 IC799_RS09930 WP_191013119.1 2141863..2142678(-) (xcpW) [Acinetobacter seifertii strain AS79]
ATGATAAAAAATAAGTACTTTTGCAATCGAAGCAAAGTTTCACGTCTTACGGCACGATCAGGTATTGTGTCGACTGACTA
CTCAGAGCATAGCTCTTCGTCTTACGCTCAGACAAAGCGCTGTTTTAGTGATTCTCACACTCGAAAAACTGTTTCTCATC
TTGCGGCGCGATCGAGCAGTGCTCGATTAGCTCGCGCCTCAGGATTTACGTTGGTTGAGTTATTGGTTGCGATTGCTATT
TTCGCGGTATTATCTTTATTGGGATGGAAAATATTCGATTATTTGCTTAAGGTCCGTGATCGTAACGCCGAACATGAAGT
GCATTTATTTGAATTACAAGATGCTTATCAACAAATTCTTCGTGATACTCTGCAAATTATTCCTTTATCTGCAAATCAAG
GTGGGCAACTTCATCCAGCTTTAGAAATCGATAATCAAATTTTACGTTTTAGCAAAGCAGGCGTAACTGATCCTTTAAAA
CAGGGGTTATCACCATTTGAACGAATTGAATATCGTTATGATGCTGACCAAAAAAAACTATATCGTCTTAAATATACAAA
TTTAAATACTTCGAATAACGAGCAACCTTTATCAAGTACCTTACTAAGTCAAGTTGACCAATATCAGGTTATGGTTTTAA
CTCCGCAAGAAGTAACAAAATGGCCCGAAGTTAATATTGATCCAACAAAACCTAACGATTTAAAAAAATTACCGAAAGGA
ATAAAAATCCAAATTACAGTAGCGGGAGTAAGTTATGAATGGATCTATAGCTTGAATCAAAGCAATTTAGCACTTTCCCA
GCAAGGTGGTTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (65-87)

• Type II secretion system (T2SS), protein J (T2SSJ) (121-250)

3D structure

• AlphaFold DB: A0A7H2VBV6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	92.92	83.395	0.775