Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IC799_RS01680 Genome accession   NZ_CP061550
Coordinates   360903..361376 (+) Length   157 a.a.
NCBI ID   WP_134262475.1    Uniprot ID   A0A5E9PH03
Organism   Acinetobacter seifertii strain AS79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355903..366376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC799_RS01655 (IC799_01655) - 356368..358473 (-) 2106 WP_004705224.1 RelA/SpoT family protein -
  IC799_RS01660 (IC799_01660) - 358513..358643 (-) 131 Protein_320 hypothetical protein -
  IC799_RS01665 (IC799_01665) rpoZ 358682..358960 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IC799_RS01670 (IC799_01670) gmk 359033..359662 (-) 630 WP_039250522.1 guanylate kinase -
  IC799_RS01675 (IC799_01675) ispH 359785..360735 (+) 951 WP_004705229.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IC799_RS01680 (IC799_01680) fimU 360903..361376 (+) 474 WP_134262475.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IC799_RS01685 (IC799_01685) pilV 361370..361930 (+) 561 WP_134262473.1 type IV pilus modification protein PilV Machinery gene
  IC799_RS01690 (IC799_01690) pilW 361930..362928 (+) 999 WP_191012233.1 PilW family protein Machinery gene
  IC799_RS01695 (IC799_01695) pilX 362925..363740 (+) 816 WP_191012232.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16875.48 Da        Isoelectric Point: 9.3090

>NTDB_id=483070 IC799_RS01680 WP_134262475.1 360903..361376(+) (fimU) [Acinetobacter seifertii strain AS79]
MRGIIPQEGFTLIELMVTIAVMAIIAMIAAPSMSNLLESKRLDTNQRDLISTLSEAKSQAVLGRQNVSVNLNSAASNTAT
SLNWQPTSNNTLTLKNIAADLTQSSLTTTTLTFNANGVVSNITQDALISICNSKINKKKNFILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=483070 IC799_RS01680 WP_134262475.1 360903..361376(+) (fimU) [Acinetobacter seifertii strain AS79]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCCTAATTGAGCTCATGGTAACAATTGCAGTCATGGCAATTATTGCAAT
GATAGCAGCACCATCTATGTCAAATTTATTAGAAAGTAAACGTTTAGATACAAATCAAAGAGATTTAATTAGCACCCTAT
CTGAGGCAAAAAGTCAGGCTGTGCTTGGACGTCAGAACGTTTCAGTCAATTTAAATTCAGCAGCGTCTAATACGGCAACT
TCATTAAATTGGCAACCAACTTCGAATAATACTCTAACGCTAAAAAATATAGCTGCTGATCTTACACAAAGTTCTTTAAC
TACCACTACTTTAACATTTAATGCAAATGGGGTAGTGAGTAATATTACTCAAGATGCGCTTATATCTATATGTAACTCAA
AAATAAATAAAAAGAAAAATTTCATACTTACAAAACTTGGAACTTTAGTTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E9PH03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879