Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IC800_RS17160 Genome accession   NZ_CP061543
Coordinates   3641245..3642813 (+) Length   522 a.a.
NCBI ID   WP_307878483.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS80     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3636245..3647813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC800_RS17140 (IC800_17140) - 3636734..3638035 (+) 1302 WP_025465069.1 homoserine dehydrogenase -
  IC800_RS17145 (IC800_17145) thrC 3638090..3639229 (+) 1140 WP_191107120.1 threonine synthase -
  IC800_RS17150 (IC800_17150) pbpG 3639341..3640387 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IC800_RS17155 (IC800_17155) - 3640599..3641234 (+) 636 WP_019457005.1 response regulator -
  IC800_RS17160 (IC800_17160) pilS 3641245..3642813 (+) 1569 WP_307878483.1 PAS domain-containing sensor histidine kinase Regulator
  IC800_RS17165 (IC800_17165) pilR 3642838..3644259 (+) 1422 WP_191107121.1 sigma-54 dependent transcriptional regulator Regulator
  IC800_RS17170 (IC800_17170) - 3644263..3645447 (-) 1185 WP_039254236.1 S41 family peptidase -
  IC800_RS17175 (IC800_17175) gpmI 3645463..3647010 (-) 1548 WP_191107122.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 58986.17 Da        Isoelectric Point: 6.3379

>NTDB_id=483056 IC800_RS17160 WP_307878483.1 3641245..3642813(+) (pilS) [Acinetobacter seifertii strain AS80]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQADNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIAAQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYNIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGDLQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLQHMIGKQAKRIDSIVQDTLGLARSERTHPMQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVTINIHSQANKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=483056 IC800_RS17160 WP_307878483.1 3641245..3642813(+) (pilS) [Acinetobacter seifertii strain AS80]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAGCCGACAATAGTTTGCAGCAACCATCTTTATATTTTT
ATACGCTGCTAGGCTACTCAATTGTCAGTCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAGCTCAGGCAACACGCCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTCTACTGACTTTTTCTGTTGGTGAACCAAATTTACAACTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCGGCAATTTTGCTCAGCGCAAGAATGTCTTTGATCATTACATTACTTGCGA
TCATTGCAGTTATTTACCAACGCTTCGTGGGTAGTTTGTTCGACTACAACAATCTAAACACGATCGGGAATAGTGCCCTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGTATTGGTCAAATTGCGGTACAGCGCTTTAAATTACTTGAAGCTTTGACCTT
TCACCAATCGGTGGAGCTTTATCAACTTCAAAATATTAACCGTTATATTTTAGAACAAATTGAAGAAGGCTATTTAGTCT
TAGATGAAGACTACAATATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTCGGTATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTGACTTACAAGAAGGTGACCGATTTAT
TTTTGAGTCCCGCCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACACTGC
TCATTTTACAAGATGCCCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGACAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAACCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGACCCAGAACAACA
AAATACTTTGCAACATATGATTGGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAGAACTCACCCTATGCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCCGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTTATGATTAA
TTTGGTACGAAATGCTTTACGGCATAATGCACCTGATTCACCTAATGTCACGATCAATATTCATTCACAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGCGTCTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

PAS fold (PAS)

(203-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

91.954

100

0.92