Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IC800_RS17000 Genome accession   NZ_CP061543
Coordinates   3610328..3610654 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter seifertii strain AS80     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3605328..3615654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC800_RS16980 (IC800_16980) - 3605435..3606061 (-) 627 WP_049065291.1 FHA domain-containing protein -
  IC800_RS16985 (IC800_16985) gspD 3606102..3608378 (-) 2277 WP_191107111.1 type II secretion system secretin GspD -
  IC800_RS16990 (IC800_16990) - 3608420..3609256 (-) 837 WP_049065293.1 type II secretion system protein N -
  IC800_RS16995 (IC800_16995) gspN 3609256..3609999 (-) 744 WP_191107112.1 type II secretion system protein N -
  IC800_RS17000 (IC800_17000) hns 3610328..3610654 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  IC800_RS17005 (IC800_17005) - 3610848..3611288 (-) 441 WP_004699193.1 thioesterase family protein -
  IC800_RS17010 (IC800_17010) - 3611296..3612489 (-) 1194 WP_191107113.1 heme biosynthesis protein HemY -
  IC800_RS17015 (IC800_17015) - 3612499..3613338 (-) 840 WP_004699197.1 hypothetical protein -
  IC800_RS17020 (IC800_17020) - 3613347..3614114 (-) 768 WP_191107114.1 uroporphyrinogen-III synthase -
  IC800_RS17025 (IC800_17025) hemC 3614119..3615036 (-) 918 WP_191107115.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=483054 IC800_RS17000 WP_002053185.1 3610328..3610654(-) (hns) [Acinetobacter seifertii strain AS80]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=483054 IC800_RS17000 WP_002053185.1 3610328..3610654(-) (hns) [Acinetobacter seifertii strain AS80]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991