Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IC800_RS09705 Genome accession   NZ_CP061543
Coordinates   2065197..2065577 (-) Length   126 a.a.
NCBI ID   WP_019458993.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS80     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2060197..2070577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC800_RS09675 (IC800_09675) tadA 2060316..2060818 (-) 503 Protein_1898 tRNA adenosine(34) deaminase TadA -
  IC800_RS09680 (IC800_09680) - 2060826..2061950 (-) 1125 WP_019458997.1 enoyl-CoA hydratase/isomerase family protein -
  IC800_RS09685 (IC800_09685) ung 2061947..2062660 (-) 714 WP_004701973.1 uracil-DNA glycosylase -
  IC800_RS09690 (IC800_09690) - 2062711..2063307 (-) 597 WP_039251397.1 6-carboxytetrahydropterin synthase -
  IC800_RS09695 (IC800_09695) gspK 2063537..2064496 (-) 960 WP_039251398.1 type II secretion system minor pseudopilin GspK -
  IC800_RS09700 (IC800_09700) xcpW 2064496..2065197 (-) 702 WP_191106483.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IC800_RS09705 (IC800_09705) xcpV 2065197..2065577 (-) 381 WP_019458993.1 type II secretion system minor pseudopilin GspI Machinery gene
  IC800_RS09710 (IC800_09710) - 2065567..2066118 (-) 552 WP_004701984.1 type II secretion system protein -
  IC800_RS09715 (IC800_09715) - 2066128..2066736 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  IC800_RS09720 (IC800_09720) - 2066774..2067547 (-) 774 WP_077168509.1 TatD family hydrolase -
  IC800_RS09725 (IC800_09725) - 2067565..2067906 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  IC800_RS09730 (IC800_09730) - 2067919..2068899 (-) 981 WP_191106484.1 DNA polymerase III subunit delta' -
  IC800_RS09735 (IC800_09735) kdsB 2068911..2069672 (-) 762 WP_191106485.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.19 Da        Isoelectric Point: 9.4463

>NTDB_id=483040 IC800_RS09705 WP_019458993.1 2065197..2065577(-) (xcpV) [Acinetobacter seifertii strain AS80]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAESTVSPNVQKIDVQISLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=483040 IC800_RS09705 WP_019458993.1 2065197..2065577(-) (xcpV) [Acinetobacter seifertii strain AS80]
ATGAAATCTAAAGGCTTTACCCTATTAGAGGTTATGGTAGCTCTTGCAATCTTTGCAGTAGCAGCTGTCGCTTTAACTAA
AGTGGCTATGCAGTACACACAGTCTACTTCTAATGCGATTTTACGAACTAAAGCTCAATTTGTAGCAATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGTTGCAAGGCACTCAAAGTAAGCAAGTAACCTCTCAAGGTGAGACTTGGCAGATT
GATAAATCAGCTGAATCGACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAATTAGCTTATATGATCCGGATAAGGG
GAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

96.032

100

0.96