Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | ICN52_RS03565 | Genome accession | NZ_CP061537 |
| Coordinates | 710161..710466 (-) | Length | 101 a.a. |
| NCBI ID | WP_002834517.1 | Uniprot ID | A0A5T0ZVB2 |
| Organism | Campylobacter coli strain PSU-32 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 705161..715466
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICN52_RS03530 (ICN52_03530) | - | 705576..706337 (+) | 762 | WP_025431509.1 | ATP-binding protein | - |
| ICN52_RS03535 (ICN52_03535) | - | 706334..707017 (+) | 684 | WP_002791740.1 | 3-methyladenine DNA glycosylase | - |
| ICN52_RS03540 (ICN52_03540) | thiD | 707017..707829 (+) | 813 | WP_190522348.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| ICN52_RS03545 (ICN52_03545) | thiE | 707819..708451 (+) | 633 | WP_002777120.1 | thiamine phosphate synthase | - |
| ICN52_RS03550 (ICN52_03550) | - | 708429..709058 (+) | 630 | WP_002783358.1 | uroporphyrinogen-III synthase | - |
| ICN52_RS03555 (ICN52_03555) | - | 709051..709503 (-) | 453 | WP_002777117.1 | hypothetical protein | - |
| ICN52_RS03560 (ICN52_03560) | - | 709500..710168 (-) | 669 | WP_002780245.1 | hypothetical protein | - |
| ICN52_RS03565 (ICN52_03565) | ctsT | 710161..710466 (-) | 306 | WP_002834517.1 | hypothetical protein | Machinery gene |
| ICN52_RS03570 (ICN52_03570) | proC | 710463..711200 (-) | 738 | WP_002834520.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| ICN52_RS03575 (ICN52_03575) | fliW | 711200..711589 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| ICN52_RS03580 (ICN52_03580) | - | 711753..712400 (+) | 648 | WP_002777091.1 | outer membrane protein assembly factor BamD | - |
| ICN52_RS03585 (ICN52_03585) | lon | 712416..714791 (+) | 2376 | WP_002783351.1 | endopeptidase La | - |
| ICN52_RS03590 (ICN52_03590) | rpsR | 714847..715107 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12456.28 Da Isoelectric Point: 6.0633
>NTDB_id=483004 ICN52_RS03565 WP_002834517.1 710161..710466(-) (ctsT) [Campylobacter coli strain PSU-32]
MKVAFSLLELILYIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILYIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=483004 ICN52_RS03565 WP_002834517.1 710161..710466(-) (ctsT) [Campylobacter coli strain PSU-32]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTATATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTATATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |