Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ICN52_RS02075 Genome accession   NZ_CP061537
Coordinates   421249..422217 (-) Length   322 a.a.
NCBI ID   WP_002780538.1    Uniprot ID   A0A400H2N3
Organism   Campylobacter coli strain PSU-32     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416249..427217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN52_RS02055 (ICN52_02055) - 417764..418396 (-) 633 WP_002792136.1 membrane protein -
  ICN52_RS02060 (ICN52_02060) - 418562..419551 (-) 990 WP_002792135.1 siderophore ABC transporter substrate-binding protein -
  ICN52_RS02065 (ICN52_02065) - 419566..420321 (-) 756 WP_002792134.1 ABC transporter ATP-binding protein -
  ICN52_RS02070 (ICN52_02070) - 420318..421256 (-) 939 WP_002792133.1 iron chelate uptake ABC transporter family permease subunit -
  ICN52_RS02075 (ICN52_02075) ceuB 421249..422217 (-) 969 WP_002780538.1 ABC transporter permease Machinery gene
  ICN52_RS02080 (ICN52_02080) - 422350..423243 (-) 894 WP_225982183.1 phospholipase A -
  ICN52_RS02085 (ICN52_02085) - 423342..423917 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  ICN52_RS02090 (ICN52_02090) - 423980..425287 (+) 1308 WP_190522322.1 NFACT RNA binding domain-containing protein -
  ICN52_RS02095 (ICN52_02095) - 425289..425627 (+) 339 WP_002777761.1 hypothetical protein -
  ICN52_RS02100 (ICN52_02100) - 425636..426361 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35535.38 Da        Isoelectric Point: 9.5069

>NTDB_id=482997 ICN52_RS02075 WP_002780538.1 421249..422217(-) (ceuB) [Campylobacter coli strain PSU-32]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=482997 ICN52_RS02075 WP_002780538.1 421249..422217(-) (ceuB) [Campylobacter coli strain PSU-32]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GACTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A400H2N3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.13

100

0.891