Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   ICN52_RS01780 Genome accession   NZ_CP061537
Coordinates   359298..360482 (+) Length   394 a.a.
NCBI ID   WP_002794274.1    Uniprot ID   A0A400H253
Organism   Campylobacter coli strain PSU-32     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 354298..365482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN52_RS01765 (ICN52_01765) - 354627..356108 (+) 1482 WP_002794280.1 sugar phosphate nucleotidyltransferase -
  ICN52_RS08660 - 356105..357238 (+) 1134 WP_052783049.1 hypothetical protein -
  ICN52_RS01775 (ICN52_01775) - 357274..359301 (+) 2028 WP_002794276.1 capsular polysaccharide biosynthesis protein -
  ICN52_RS01780 (ICN52_01780) kpsS 359298..360482 (+) 1185 WP_002794274.1 capsule biosynthesis protein Regulator
  ICN52_RS01785 (ICN52_01785) - 360549..361670 (+) 1122 WP_002794272.1 hypothetical protein -
  ICN52_RS01790 (ICN52_01790) - 361667..363037 (+) 1371 WP_002783822.1 cytochrome P450 -
  ICN52_RS01795 (ICN52_01795) - 363034..363456 (+) 423 WP_002779166.1 hypothetical protein -
  ICN52_RS01800 (ICN52_01800) acpS 363459..363806 (-) 348 WP_002779165.1 holo-ACP synthase -
  ICN52_RS01805 (ICN52_01805) fliL 363806..364342 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46603.27 Da        Isoelectric Point: 10.0440

>NTDB_id=482995 ICN52_RS01780 WP_002794274.1 359298..360482(+) (kpsS) [Campylobacter coli strain PSU-32]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKI
DAIVMYNDCRLIHAKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNISTKESIKEIPGGFKF
MAFSAFLYWFFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLIFKHHPMDRGYRNYSKLINGLSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPSLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=482995 ICN52_RS01780 WP_002794274.1 359298..360482(+) (kpsS) [Campylobacter coli strain PSU-32]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGCACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTCTATGAGAACTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATTCATGCAAAAGCTATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATTTCTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCCTTTAGTGCTTTTTTGTATTGGTTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTATTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTAT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGGGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTCTATGTACATGATACTTATTTGCCTACTCTTTTAAAAAATGCTTTAGGTTGTATTACGATCAATTCT
ACAGTAGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCATTTTACAATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A400H253

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.31

100

0.873