Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   ICN52_RS01535 Genome accession   NZ_CP061537
Coordinates   310833..311144 (+) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain PSU-32     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305833..316144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN52_RS01525 (ICN52_01525) - 306507..307145 (+) 639 WP_002794520.1 HAD family hydrolase -
  ICN52_RS01530 (ICN52_01530) nifJ 307249..310809 (+) 3561 WP_002794518.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  ICN52_RS01535 (ICN52_01535) ctsR 310833..311144 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  ICN52_RS01540 (ICN52_01540) ctsD 311122..312540 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  ICN52_RS01545 (ICN52_01545) ctsP 312533..313129 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  ICN52_RS01550 (ICN52_01550) - 313126..313722 (+) 597 WP_002779313.1 CDC27 family protein -
  ICN52_RS01555 (ICN52_01555) ctsE 313715..315277 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=482990 ICN52_RS01535 WP_002779316.1 310833..311144(+) (ctsR) [Campylobacter coli strain PSU-32]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=482990 ICN52_RS01535 WP_002779316.1 310833..311144(+) (ctsR) [Campylobacter coli strain PSU-32]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553